Mercurial > repos > iuc > data_manager_metaphlan_database_downloader

comparison data_manager_conf.xml @ 2:cd37ae83ce0d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan_database_downloader commit 57df6e8a0ffd145e560f7c7e20cfedbbe2ce01d2
author iuc
date Tue, 28 Mar 2023 18:54:00 +0000
parents e3743fbc78aa
children
comparison
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1:18cb9bc1d9ae 2:cd37ae83ce0d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_metaphlan_download.xml" id="data_manager_metaphlan_download" > 3 <data_manager tool_file="data_manager/data_manager_metaphlan_download.xml" id="data_manager_metaphlan_download">
4 <data_table name="metaphlan_database"> <!-- Defines a Data Table to be modified. --> 4 <data_table name="metaphlan_database_versioned"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value"/> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 7 <column name="name"/> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool --> 8 <column name="dbkey"/> <!-- columns that are going to be specified by the Data Manager Tool -->
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file">
10 <move type="directory"> 10 <move type="directory">
11 <source>${path}</source> 11 <source>${path}</source>
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan/data/${dbkey}</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan/data/${dbkey}</target>
13 </move> 13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan/data/${dbkey}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan/data/${dbkey}</value_translation>
15 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
16 </column> 16 </column>
17 <column name="db_version"/> <!-- columns that are going to be specified by the Data Manager Tool -->
17 </output> 18 </output>
18 </data_table> 19 </data_table>
19 </data_manager> 20 </data_manager>
20 </data_managers> 21 </data_managers>
21 22