Mercurial > repos > iuc > data_manager_metaphlan2_database_downloader

annotate data_manager_conf.xml @ 0:db1dd1044a39 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
author iuc
date Sat, 04 Mar 2017 12:10:42 -0500
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db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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1 <?xml version="1.0"?>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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2 <data_managers>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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3 <data_manager tool_file="data_manager/data_manager_metaphlan2_download.xml" id="data_manager_metaphlan2_download" >
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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4 <data_table name="metaphlan2_database"> <!-- Defines a Data Table to be modified. -->
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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5 <output> <!-- Handle the output of the Data Manager Tool -->
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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8 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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9 <column name="path" output_ref="out_file" >
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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10 <move type="directory">
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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11 <source>${path}</source>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">metaphlan2/data/${dbkey}</target>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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13 </move>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/metaphlan2/data/${dbkey}</value_translation>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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15 <value_translation type="function">abspath</value_translation>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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16 </column>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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17 </output>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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18 </data_table>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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19 </data_manager>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
iuc
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20 </data_managers>
db1dd1044a39 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_metaphlan2_database_downloader commit 345fb7ef485456ae833be5ad2d2ce4f8765652c8
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21