Mercurial > repos > iuc > data_manager_mapseq
diff readme.md @ 0:3f7f3ef77c34 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/ commit 960c1f69ec78943dfe72eff0a0992a2ce15d2555
| author | iuc |
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| date | Mon, 30 Sep 2024 10:07:29 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/readme.md Mon Sep 30 10:07:29 2024 +0000 @@ -0,0 +1,18 @@ +# test data explained + +## the tool will expect one file each with the corresponing endings in the DB folder + +Trimmed version of: +* OTU table (id for each taxon) (*.otu) +* Ref. fasta DB (*.fasta) +* Taxan assignemnt of each ref. DB sequence (*.txt) +* clustering of the ref. sequences (starting with 0) corresponding to the ref. sequences (*.mscluster) + +## Command to get DBs + +``` +wget ftp://ftp.ebi.ac.uk/pub/databases/metagenomics/pipeline-5.0/ref-dbs/silva_lsu-20200130.tar.gz +mkdir temp +tar xvzf silva_ssu-20200130.tar.gz -C temp +mv temp/* silva_ssu-20200130 +``` \ No newline at end of file