Mercurial > repos > iuc > data_manager_malt_index_builder
comparison tool-data/malt_indices.loc.sample @ 0:a0865793c152 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_malt_index_builder commit 710e56e0e522b0ed060dab2fecf05ed1c79c928f"
| author | iuc |
|---|---|
| date | Wed, 17 Nov 2021 08:22:26 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:a0865793c152 |
|---|---|
| 1 # This is a sample file distributed with Galaxy that enables tools | |
| 2 # to use a directory of MALT indexed data files. The malt_index.loc | |
| 3 # file has this format (longer white space characters are TAB characters): | |
| 4 # | |
| 5 # <unique_build_id> <dbkey> <display_name> <directory_path> | |
| 6 # | |
| 7 # So, for example, if you have the phiX indexe stored in | |
| 8 # /depot/data2/galaxy/phiX/base/, | |
| 9 # then the malt_index.loc entry would look like this: | |
| 10 # | |
| 11 # phiX174 phiX phiX Pretty /depot/data2/galaxy/phiX/base | |
| 12 # | |
| 13 # and your /depot/data2/galaxy/phiX/base/ directory | |
| 14 # would contain MALT index files for phiX174, sommething like this: | |
| 15 # | |
| 16 # -rw-r----- 1 galaxy galaxy 69 Oct 15 09:51 index0.idx | |
| 17 # -rw-r----- 1 galaxy galaxy 5442 Oct 15 09:51 ref.db | |
| 18 # -rw-r----- 1 galaxy galaxy 8 Oct 15 09:51 ref.idx | |
| 19 # -rw-r----- 1 galaxy galaxy 25 Oct 15 09:51 ref.inf | |
| 20 # -rw-r----- 1 galaxy galaxy 24952 Oct 15 09:51 table0.db | |
| 21 # -rw-r----- 1 galaxy galaxy 65536 Oct 15 09:51 table0.idx | |
| 22 # | |
| 23 phiX174 NC_001422 Coliphage phiX174 /depot/data2/galaxy/tool-data/malt_index/phiX174 |