Mercurial > repos > iuc > data_manager_gtdbtk_database_installer

comparison data_manager/gtdbtk_database_installer.xml @ 9:1a049e50e6b8 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit c63b1bff90ebc5b5df0a4cbd9a294fc1d51583c7
author iuc
date Thu, 09 Oct 2025 08:23:46 +0000
parents 6a6175006cb9
children
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8:6a6175006cb9 9:1a049e50e6b8
1 <tool id="gtdbtk_database_installer" name="GTDB-Tk Database Installer" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@"> 1 <tool id="gtdbtk_database_installer" name="GTDB-Tk Database Installer" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description></description> 2 <description></description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">202</token> 4 <token name="@TOOL_VERSION@">226</token>
5 <token name="@VERSION_SUFFIX@">4</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 <token name="@PROFILE@">20.09</token> 6 <token name="@PROFILE@">20.09</token>
7 </macros> 7 </macros>
8 <requirements> 8 <requirements>
9 <requirement type="package" version="3.10.2">python</requirement> 9 <requirement type="package" version="3.10.2">python</requirement>
10 </requirements> 10 </requirements>
23 <param name="release" type="select" multiple="false" label="GTDB Release"> 23 <param name="release" type="select" multiple="false" label="GTDB Release">
24 <option value="202">202</option> 24 <option value="202">202</option>
25 <option value="207">207</option> 25 <option value="207">207</option>
26 <option value="214">214</option> 26 <option value="214">214</option>
27 <option value="220">220</option> 27 <option value="220">220</option>
28 <option value="226">226</option>
29 <option value="mocked_226">mocked DB (226)</option>
28 </param> 30 </param>
29 </inputs> 31 </inputs>
30 <outputs> 32 <outputs>
31 <data name="out_file" format="data_manager_json"/> 33 <data name="out_file" format="data_manager_json"/>
32 </outputs> 34 </outputs>
41 <has_text text="Full Database - release 202 "/> 43 <has_text text="Full Database - release 202 "/>
42 <has_text text="full_database_release_202_downloaded"/> 44 <has_text text="full_database_release_202_downloaded"/>
43 </assert_contents> 45 </assert_contents>
44 </output> 46 </output>
45 </test> 47 </test>
48 <!-- Test meta data download with tsv.gz-->
49 <!-- to large .. takes to much time
46 <test> 50 <test>
47 <!-- Test meta data download with tsv.gz-->
48 <param name="release" value="220"/> 51 <param name="release" value="220"/>
49 <param name="meta" value="true"/> 52 <param name="meta" value="true"/>
50 <output name="out_file"> 53 <output name="out_file">
51 <assert_contents> 54 <assert_contents>
52 <has_text text="Metadata Tables - release 220"/> 55 <has_text text="Metadata Tables - release 220"/>
53 <has_text text="metadata_tables_release_220_downloaded_"/> 56 <has_text text="metadata_tables_release_220_downloaded_"/>
54 </assert_contents> 57 </assert_contents>
55 </output> 58 </output>
56 </test> 59 </test> -->
57 <test> 60 <test>
58 <!-- Test meta data download with tar.gz --> 61 <!-- Test meta data download with tar.gz -->
59 <param name="release" value="207"/> 62 <param name="release" value="207"/>
60 <param name="meta" value="true"/> 63 <param name="meta" value="true"/>
61 <output name="out_file"> 64 <output name="out_file">