Mercurial > repos > iuc > data_manager_gtdbtk_database_installer

comparison data_manager_conf.xml @ 2:9dcb593e8a43 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit ad14947c3e13babe90a6878b45608fe56a16150d
author iuc
date Tue, 13 Aug 2024 21:13:34 +0000
parents 3221e031d107
children
comparison
equal deleted inserted replaced
1:f54abc2f5707 2:9dcb593e8a43
1 <data_managers> 1 <data_managers>
2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer"> 2 <data_manager tool_file="data_manager/gtdbtk_database_installer.xml" id="gtdbtk_database_installer">
3 <data_table name="gtdbtk_database"> 3 <data_table name="gtdbtk_database_versioned">
4 <output> 4 <output>
5 <column name="value"/> 5 <column name="value"/>
6 <column name="name"/> 6 <column name="name"/>
7 <column name="version"/>
7 <column name="path" output_ref="out_file"> 8 <column name="path" output_ref="out_file">
8 <move type="directory" relativize_symlinks="True"> 9 <move type="directory" relativize_symlinks="True">
9 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database/${value}</target> 10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database_versioned/${value}</target>
10 </move> 11 </move>
11 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database/${value}</value_translation> 12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database_versioned/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation>
14 </column>
15 </output>
16 </data_table>
17 <data_table name="gtdbtk_database_metadata_versioned">
18 <output>
19 <column name="value"/>
20 <column name="name"/>
21 <column name="version"/>
22 <column name="path" output_ref="out_file">
23 <move type="directory" relativize_symlinks="True">
24 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gtdbtk_database_metadata_versioned/${value}</target>
25 </move>
26 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gtdbtk_database_metadata_versioned/${value}</value_translation>
12 <value_translation type="function">abspath</value_translation> 27 <value_translation type="function">abspath</value_translation>
13 </column> 28 </column>
14 </output> 29 </output>
15 </data_table> 30 </data_table>
16 </data_manager> 31 </data_manager>