Mercurial > repos > iuc > data_manager_gtdbtk_database_installer

comparison data_manager/gtdbtk_database_installer.xml @ 4:700c4fbdd3e1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gtdbtk_database_installer commit 0bb620025a61de6caa8a93537fec8ea65eda43be
author iuc
date Fri, 16 Aug 2024 08:44:07 +0000
parents 9dcb593e8a43
children dd0a3c0b290e
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3:45d5763ab173 4:700c4fbdd3e1
34 </outputs> 34 </outputs>
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <!-- TODO --> 37 <!-- TODO -->
38 <!-- Not actually installing a huge GTDB-Tk database --> 38 <!-- Not actually installing a huge GTDB-Tk database -->
39 <!-- but it will check if all urls exist -->
39 <param name="release" value="202"/> 40 <param name="release" value="202"/>
40 <param name="database_name" value="GTDB-Tk database release 202"/> 41 <param name="database_name" value="GTDB-Tk database release 202"/>
41 <param name="test" value="--test"/> 42 <param name="test" value="--test"/>
42 <output name="out_file"> 43 <output name="out_file">
43 <assert_contents> 44 <assert_contents>
44 <has_text text="GTDB-Tk database release 202"/> 45 <has_text text="GTDB-Tk database release 202"/>
45 <has_text text="release_test"/> 46 <has_text text="release_202"/>
46 </assert_contents> 47 </assert_contents>
47 </output> 48 </output>
48 </test> 49 </test>
49 <test> 50 <test>
50 <!-- Test meta data download --> 51 <!-- Test meta data download with tsv.gz-->
51 <param name="release" value="202"/> 52 <param name="release" value="220"/>
52 <param name="database_name" value="GTDB-Tk database release 202 metadata"/> 53 <param name="database_name" value="GTDB-Tk database release 220 metadata"/>
53 <param name="meta" value="true"/> 54 <param name="meta" value="true"/>
54 <param name="test" value="--test"/>
55 <output name="out_file"> 55 <output name="out_file">
56 <assert_contents> 56 <assert_contents>
57 <has_text text="GTDB-Tk database release 202 metadata"/> 57 <has_text text="GTDB-Tk database release 220 metadata"/>
58 <has_text text="release_test"/> 58 <has_text text="release_220"/>
59 </assert_contents>
60 </output>
61 </test>
62 <test>
63 <!-- Test meta data download with tar.gz -->
64 <param name="release" value="207"/>
65 <param name="database_name" value="GTDB-Tk database release 207 metadata"/>
66 <param name="meta" value="true"/>
67 <output name="out_file">
68 <assert_contents>
69 <has_text text="GTDB-Tk database release 207 metadata"/>
70 <has_text text="release_207"/>
59 </assert_contents> 71 </assert_contents>
60 </output> 72 </output>
61 </test> 73 </test>
62 </tests> 74 </tests>
63 <help> 75 <help>