Mercurial > repos > iuc > data_manager_gemini_downloader

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
author iuc
date Tue, 29 Dec 2015 10:58:29 -0500
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7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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2 <description>Download a new database</description>
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3 <requirements>
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4 <requirement type="package" version="0.18.1">gemini</requirement>
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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5 </requirements>
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6 <stdio>
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7 <exit_code range=":-1" level="fatal" description="Error: Cannot open file" />
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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8 <exit_code range="1:" level="fatal" description="Error" />
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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9 </stdio>
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10 <command interpreter="python">
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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11 data_manager_gemini_download.py "$out_file"
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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12 </command>
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13 <inputs>
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14 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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15 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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16 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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17 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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18 </inputs>
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19 <outputs>
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20 <data name="out_file" format="data_manager_json" label="${tool.name}"/>
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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21 </outputs>
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22 <tests>
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23 </tests>
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24 <help>
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26 This tool downloads the GEMINI databases.
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28 For details about this tool, please go to http://gemini.readthedocs.org
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30 </help>
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31 <citations>
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32 <citation type="doi">10.1371/journal.pcbi.1003153</citation>
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33 <yield />
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34 </citations>
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35 </tool>
7848037cb701 planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit 2bffef0f9e5d35ae0af1f74f044b5b1431b01d32-dirty
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