Mercurial > repos > iuc > data_manager_gemini_database_downloader

comparison data_manager_conf.xml @ 4:688e5894bb2b draft

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author iuc
date Sun, 17 Aug 2014 09:44:56 -0400
parents 7cfa2506531d
children 839086b394ba
comparison
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3:7cfa2506531d 4:688e5894bb2b
2 <data_managers> 2 <data_managers>
3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" > 3 <data_manager tool_file="data_manager/data_manager_gemini_download.xml" id="data_manager_gemini_download" >
4 <data_table name="gemini_databases"> <!-- Defines a Data Table to be modified. --> 4 <data_table name="gemini_databases"> <!-- Defines a Data Table to be modified. -->
5 <output> <!-- Handle the output of the Data Manager Tool --> 5 <output> <!-- Handle the output of the Data Manager Tool -->
6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool --> 6 <column name="value" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="dbkey" /> <!-- columns that are going to be specified by the Data Manager Tool -->
7 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool --> 8 <column name="name" /> <!-- columns that are going to be specified by the Data Manager Tool -->
8 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
9 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/data/${value}</target> 11 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">gemini/data/${dbkey}/${value}</target>
11 </move> 12 </move>
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/data/${value}</value_translation> 13 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/gemini/data/${dbkey}/${value}</value_translation>
13 <value_translation type="function">abspath</value_translation> 14 <value_translation type="function">abspath</value_translation>
14 </column> 15 </column>
15 </output> 16 </output>
16 </data_table> 17 </data_table>
17 </data_manager> 18 </data_manager>