Mercurial > repos > iuc > data_manager_dada2

diff data_manager/data_manager.py @ 4:739943802404 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:43:42 +0000
parents d17e5d13b86c
children
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line diff
--- a/data_manager/data_manager.py	Tue Jul 14 11:31:41 2020 +0000
+++ b/data_manager/data_manager.py	Sun Nov 22 12:43:42 2020 +0000
@@ -100,8 +100,8 @@
 
 def remote_dataset(dataset, outjson):
 
-    with open(outjson) as jf:
-        params = json.loads(jf.read())
+    with open(outjson) as fh:
+        params = json.load(fh)
 
     workdir = params['output_data'][0]['extra_files_path']
     os.mkdir(workdir)
@@ -123,8 +123,8 @@
         data_manager_entry['path'] = dataset + ".species"
         data_manager_json["data_tables"]["dada2_species"] = data_manager_entry
 
-    with open(outjson, 'w') as jf:
-        jf.write(json.dumps(data_manager_json, sort_keys=True))
+    with open(outjson, 'w') as fh:
+        json.dump(data_manager_json, fh, sort_keys=True)
 
 
 if __name__ == '__main__':