Mercurial > repos > iuc > data_manager_dada2

comparison data_manager/dada2_fetcher.xml @ 3:d17e5d13b86c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit 8533fe71d1d50f09348da2dc34941724407a1ffe"
author iuc
date Tue, 14 Jul 2020 11:31:41 +0000
parents dc124329622f
children 658dbcc9d77d
comparison
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2:dc124329622f 3:d17e5d13b86c
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="dada2_fetcher" name="dada2 data manager" tool_type="manage_data" profile="18.09" version="0.0.9"> 2 <tool id="dada2_fetcher" name="dada2 data manager" tool_type="manage_data" version="0.0.7">
3 <description>Download reference databases</description>
4 <requirements> 3 <requirements>
5 <requirement type="package" version="3.7">python</requirement> 4 <requirement type="package" version="3.7">python</requirement>
6 </requirements> 5 </requirements>
6 <description>Download reference databases</description>
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 python '$__tool_directory__/data_manager.py' 8 python '$__tool_directory__/data_manager.py'
9 --out '$out_file' 9 --out '$out_file'
10 #set dataset = str($db_cond.db_select) + '_' + str($db_cond.version_select) 10 #set dataset = str($db_cond.db_select) + '_' + str($db_cond.version_select)
11 --dataset '$dataset' 11 --dataset '$dataset'
25 <option value="silva_euk_18S">Silva Eukaryotic 18S</option> 25 <option value="silva_euk_18S">Silva Eukaryotic 18S</option>
26 <option value="PR2">Protist Ribosomal Reference database (PR2)</option> 26 <option value="PR2">Protist Ribosomal Reference database (PR2)</option>
27 </param> 27 </param>
28 <when value="silva"> 28 <when value="silva">
29 <param name="version_select" type="select" label="Database version"> 29 <param name="version_select" type="select" label="Database version">
30 <option value="138">138</option>
31 <option value="132">132</option> 30 <option value="132">132</option>
32 <option value="128">128</option> 31 <option value="128">128</option>
33 </param> 32 </param>
34 </when> 33 </when>
35 <when value="rdp"> 34 <when value="rdp">
78 </inputs> 77 </inputs>
79 <outputs> 78 <outputs>
80 <data name="out_file" format="data_manager_json" /> 79 <data name="out_file" format="data_manager_json" />
81 </outputs> 80 </outputs>
82 <tests> 81 <tests>
83 <test>
84 <param name="db_cond|db_select" value="silva"/>
85 <param name="db_cond|version_select" value="138"/>
86 <output name="out_file" file="silva138_json"/>
87 </test>
88 <test> 82 <test>
89 <param name="db_cond|db_select" value="silva"/> 83 <param name="db_cond|db_select" value="silva"/>
90 <param name="db_cond|version_select" value="132"/> 84 <param name="db_cond|version_select" value="132"/>
91 <output name="out_file" file="silva132_json"/> 85 <output name="out_file" file="silva132_json"/>
92 </test> 86 </test>