Mercurial > repos > iuc > data_manager_cat

comparison data_manager/data_manager_cat.py @ 1:5efcedfa6157 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"
author iuc
date Sun, 22 Nov 2020 12:43:10 +0000
parents 3db8d67192d2
children
comparison
equal deleted inserted replaced
0:3db8d67192d2 1:5efcedfa6157
87 os.makedirs(args.install_path) 87 os.makedirs(args.install_path)
88 if args.db_url: 88 if args.db_url:
89 url_download(args.db_url, args.install_path) 89 url_download(args.db_url, args.install_path)
90 else: 90 else:
91 cat_prepare(args.install_path) 91 cat_prepare(args.install_path)
92 for root, dirs, files in os.walk(args.install_path): 92 for root, dirs, _ in os.walk(args.install_path):
93 for dname in dirs: 93 for dname in dirs:
94 if dname.endswith('CAT_database'): 94 if dname.endswith('CAT_database'):
95 cat_db = dname 95 cat_db = dname
96 elif dname.endswith('taxonomy'): 96 elif dname.endswith('taxonomy'):
97 tax_db = dname 97 tax_db = dname
107 data_table_entry = dict(value=cat_dir, name=cat_dir, 107 data_table_entry = dict(value=cat_dir, name=cat_dir,
108 database_folder=os.path.join(cat_dir, cat_db), 108 database_folder=os.path.join(cat_dir, cat_db),
109 taxonomy_folder=os.path.join(cat_dir, tax_db)) 109 taxonomy_folder=os.path.join(cat_dir, tax_db))
110 dm_dict['data_tables'][data_table].append(data_table_entry) 110 dm_dict['data_tables'][data_table].append(data_table_entry)
111 # save info to json file 111 # save info to json file
112 open(args.config_file, 'w').write(json.dumps(dm_dict)) 112 with open(args.config_file, 'w') as fh:
113 json.dump(dm_dict, fh, sort_keys=True)
113 114
114 115
115 if __name__ == "__main__": 116 if __name__ == "__main__":
116 main() 117 main()