Mercurial > repos > iuc > data_manager_build_kraken2_database

comparison data_manager/kraken2_build_database.py @ 11:36cdd9783e6b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 66be7bc4e07926c3645ba87f78702f2267fad7b3
author iuc
date Fri, 13 Dec 2024 21:18:22 +0000
parents 4726ecf3b61b
children
comparison
equal deleted inserted replaced
10:4726ecf3b61b 11:36cdd9783e6b
64 pluspf_16gb = "pluspf_16gb" 64 pluspf_16gb = "pluspf_16gb"
65 pluspfp = "pluspfp" 65 pluspfp = "pluspfp"
66 pluspfp_08gb = "pluspfp_08gb" 66 pluspfp_08gb = "pluspfp_08gb"
67 pluspfp_16gb = "pluspfp_16gb" 67 pluspfp_16gb = "pluspfp_16gb"
68 eupathdb48 = "eupathdb48" 68 eupathdb48 = "eupathdb48"
69 core_nt = "core_nt"
70 gtdb_genome_reps = "gtdb_genome_reps"
69 71
70 def __str__(self): 72 def __str__(self):
71 return self.value 73 return self.value
72 74
73 75
146 'pluspf_16gb': "PlusPF-16 (PlusPF with DB capped at 16 GB)", 148 'pluspf_16gb': "PlusPF-16 (PlusPF with DB capped at 16 GB)",
147 'pluspfp': "PlusPFP (Standard plus protozoa, fungi and plant)", 149 'pluspfp': "PlusPFP (Standard plus protozoa, fungi and plant)",
148 'pluspfp_08gb': "PlusPFP-8 (PlusPFP with DB capped at 8 GB)", 150 'pluspfp_08gb': "PlusPFP-8 (PlusPFP with DB capped at 8 GB)",
149 'pluspfp_16gb': "PlusPFP-16 (PlusPFP with DB capped at 16 GB)", 151 'pluspfp_16gb': "PlusPFP-16 (PlusPFP with DB capped at 16 GB)",
150 'eupathdb48': "EuPathDB-46", 152 'eupathdb48': "EuPathDB-46",
153 'core_nt': "core_nt (Very large collection, inclusive of GenBank, RefSeq, TPA and PDB)",
154 'gtdb_genome_reps': "GTDB v220 (Bacterial and archaeal)",
151 } 155 }
152 156
153 database_value = "_".join([ 157 database_value = "_".join([
154 now, 158 now,
155 "standard_prebuilt", 159 "standard_prebuilt",