Mercurial > repos > iuc > data_manager_build_bracken_database

comparison data_manager/bracken_build_database.xml @ 5:cef566388a0f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_bracken_database/ commit db62b99fe2c0e77e7ee63da5fb315f4b6d95170b
author iuc
date Mon, 22 May 2023 19:24:06 +0000
parents 66055e6b3cdf
children a0f18c07696a
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4:5bc823e95ed3 5:cef566388a0f
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bracken_build_database" name="Bracken Database Builder" tool_type="manage_data" version="2.5+galaxy1" profile="19.01"> 2 <tool id="bracken_build_database" name="Bracken Database Builder" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
3 <description>bracken database builder</description> 3 <description>bracken database builder</description>
4 <macros>
5 <token name="@TOOL_VERSION@">2.8</token>
6 <token name="@VERSION_SUFFIX@">0</token>
7 <token name="@PROFILE@">22.01</token>
8 </macros>
4 <requirements> 9 <requirements>
5 <requirement type="package" version="2.5">bracken</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">bracken</requirement>
6 <requirement type="package" version="2.1.1">kraken2</requirement>
7 </requirements> 11 </requirements>
8 <command> 12 <command>
9 <![CDATA[ 13 <![CDATA[
10 #import os 14 #import os
11 #set db_dir = os.path.basename($kraken_db.fields.path) 15 #set db_dir = os.path.basename($kraken_db.fields.path)
45 </when> 49 </when>
46 <when value="yes"> 50 <when value="yes">
47 <param name="read_len" type="select" label="Read length" > 51 <param name="read_len" type="select" label="Read length" >
48 <option value="50">50</option> 52 <option value="50">50</option>
49 <option value="75">75</option> 53 <option value="75">75</option>
50 <option value="100">100</option> 54 <option value="100" selected="true">100</option>
51 <option value="150">150</option> 55 <option value="150">150</option>
52 <option value="200">200</option> 56 <option value="200">200</option>
53 <option value="250">250</option> 57 <option value="250">250</option>
54 <option value="300">300</option> 58 <option value="300">300</option>
55 </param> 59 </param>