Mercurial > repos > iuc > data_manager_bowtie_index_builder
diff data_manager/bowtie_index_builder.xml @ 0:ddd44c79a065 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 116d4acd35c9357d23f2419cd331b675503916a1-dirty
| author | iuc |
|---|---|
| date | Thu, 15 Sep 2016 03:13:57 -0400 |
| parents | |
| children | de991e82646a |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/bowtie_index_builder.xml Thu Sep 15 03:13:57 2016 -0400 @@ -0,0 +1,31 @@ +<tool id="bowtie_index_builder_data_manager" name="Bowtie index" tool_type="manage_data" version="0.0.2"> + <description>builder</description> + <requirements> + <requirement type="package" version="0.12.7">bowtie</requirement> + </requirements> + <command interpreter="python"> + bowtie_index_builder.py + "${out_file}" + --fasta_filename "${all_fasta_source.fields.path}" + --fasta_dbkey "${all_fasta_source.fields.dbkey}" + --fasta_description "${all_fasta_source.fields.name}" + --data_table_name "bowtie_indexes" + </command> + <inputs> + <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> + <options from_data_table="all_fasta"/> + </param> + <param type="text" name="sequence_name" value="" label="Name of sequence" help="Leave blank to use all_fasta name" /> + <param type="text" name="sequence_id" value="" label="ID for sequence" help="Leave blank to use all_fasta id "/> + </inputs> + <outputs> + <data name="out_file" format="data_manager_json"/> + </outputs> + <help> + +.. class:: infomark + +**Notice:** If you leave name, description, or id blank, it will be generated automatically. + + </help> +</tool>