Mercurial > repos > iuc > data_manager_bowtie_index_builder

comparison data_manager_conf.xml @ 7:a601bb53be5f draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author iuc
date Thu, 05 Dec 2024 06:47:05 +0000
parents bee4e8729ce7
children
comparison
equal deleted inserted replaced
6:bee4e8729ce7 7:a601bb53be5f
7 <column name="dbkey" /> 7 <column name="dbkey" />
8 <column name="name" /> 8 <column name="name" />
9 <column name="path" output_ref="out_file" > 9 <column name="path" output_ref="out_file" >
10 <move type="directory" relativize_symlinks="True"> 10 <move type="directory" relativize_symlinks="True">
11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base --> 11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index</target> 12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bowtie_index/v1/${value}</target>
13 </move> 13 </move>
14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/${path}</value_translation> 14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bowtie_index/v1/${value}/${path}</value_translation>
15 <value_translation type="function">abspath</value_translation>
16 </column>
17 </output>
18 </data_table>
19 </data_manager>
20 <data_manager tool_file="data_manager/bowtie_color_space_index_builder.xml" id="bowtie_color_space_index_builder">
21 <data_table name="bowtie_indexes_color">
22 <output>
23 <column name="value" />
24 <column name="dbkey" />
25 <column name="name" />
26 <column name="path" output_ref="out_file" >
27 <move type="directory" relativize_symlinks="True">
28 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
29 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bowtie_index/color</target> <!-- confirm this as preferred location -->
30 </move>
31 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bowtie_index/color/${path}</value_translation>
32 <value_translation type="function">abspath</value_translation> 15 <value_translation type="function">abspath</value_translation>
33 </column> 16 </column>
34 </output> 17 </output>
35 </data_table> 18 </data_table>
36 </data_manager> 19 </data_manager>