Mercurial > repos > iuc > data_manager_bowtie_index_builder

comparison tool-data/all_fasta.loc.sample @ 3:00d807711b52 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bowtie_index_builder commit 88ce6b707389753fa419f5abe469c6c7b0de0570
author iuc
date Fri, 09 Jun 2017 05:37:08 -0400
parents ddd44c79a065
children
comparison
equal deleted inserted replaced
2:ddd473181942 3:00d807711b52
2 #under the "genome" directory (a directory that contains a directory 2 #under the "genome" directory (a directory that contains a directory
3 #for each build). The script extract_fasta.py will generate the file 3 #for each build). The script extract_fasta.py will generate the file
4 #all_fasta.loc. This file has the format (white space characters are 4 #all_fasta.loc. This file has the format (white space characters are
5 #TAB characters): 5 #TAB characters):
6 # 6 #
7 #<unique_build_id> <dbkey> <display_name> <file_path> 7 #<unique_build_id> <dbkey> <display_name> <file_path>
8 # 8 #
9 #So, all_fasta.loc could look something like this: 9 #So, all_fasta.loc could look something like this:
10 # 10 #
11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa 11 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa 12 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa 13 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
14 # 14 #
15 #Your all_fasta.loc file should contain an entry for each individual 15 #Your all_fasta.loc file should contain an entry for each individual
16 #fasta file. So there will be multiple fasta files for each build, 16 #fasta file. So there will be multiple fasta files for each build,
17 #such as with hg19 above. 17 #such as with hg19 above.
18 # 18 #