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comparison data_manager/bakta_build_database.xml @ 0:a84adf8c8a4a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bakta commit fba6deae1d3707e0c14202433d0495e157745afd
author iuc
date Sat, 10 Dec 2022 21:52:13 +0000
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children c0bd27c2bc9b
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-1:000000000000 0:a84adf8c8a4a
1 <tool id="bakta_build_database" name="Bakta" tool_type="manage_data" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Bakta database builder</description>
3 <macros>
4 <import>macro.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <command detect_errors="exit_code">
8 <![CDATA[
9 python '$__tool_directory__/bakta_build_database.py'
10 '$output_file'
11 --database_version '$database_select'
12 $test_data_manager
13 ]]></command>
14 <inputs>
15 <param name="database_select" type="select" label="Database version" help="Choose a database version to download (default latest version)">
16 <option value="latest" selected="true">Latest available version</option>
17 <option value="1.0">V1.0_2020-11-20</option>
18 <option value="1.1">V1.1_2020-12-18</option>
19 <option value="2.0">V2.0_2021-04-05</option>
20 <option value="3.0">V3.0_2021-08-05</option>
21 <option value="3.1">V3.1_2022-02-03</option>
22 <option value="4.0">V4.0_2022-08-29</option>
23 </param>
24 <param name="test_data_manager" type="hidden" value=""/>
25 </inputs>
26 <outputs>
27 <data name="output_file" format="data_manager_json"/>
28 </outputs>
29 <tests>
30 <!-- Test 1 with version 1.0 -->
31 <test expect_num_outputs="1">
32 <param name="test_data_manager" value="--test"/>
33 <param name="database_select" value="1.0"/>
34 <output name="output_file" value="bakta_test_data_manager.json" />
35 </test>
36 <!-- Test 2 with the latest option -->
37 <test expect_num_outputs="1">
38 <param name="test_data_manager" value="--test"/>
39 <param name="database_select" value="latest"/>
40 <output name="output_file" value="bakta_test_data_manager_test2.json" />
41 </test>
42 </tests>
43 <help><![CDATA[
44 Download specific version of Bakta database <https://github.com/oschwengers/bakta#database>
45 ]]></help>
46 <citations>
47 <citation type="doi">10.1099/mgen.0.000685</citation>
48 </citations>
49 </tool>