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comparison das_tool.xml @ 3:2134c6475514 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/das_tool commit 9c2eb2c9e495cad54084973587d07e8035f3fd9b
author iuc
date Thu, 06 Jul 2023 12:26:48 +0000
parents 57e7d0b1681c
children
comparison
equal deleted inserted replaced
2:7bbed5b2c928 3:2134c6475514
81 <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" > 81 <data name="eval" format="tabular" from_work_dir="outputs_allBins.eval" label="${tool.name} on ${on_string}: Quality and completeness estimates of input bin sets" >
82 <filter>output['write_bin_evals']</filter> 82 <filter>output['write_bin_evals']</filter>
83 </data> 83 </data>
84 <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins"> 84 <collection name="bins" type="list" label="${tool.name} on ${on_string}: Bins">
85 <filter>output['write_bins']['write_bins'] != ""</filter> 85 <filter>output['write_bins']['write_bins'] != ""</filter>
86 <discover_datasets pattern=".*?\.(?P&lt;designation&gt;.*)\.fa" format="fasta" directory="outputs_DASTool_bins" /> 86 <discover_datasets pattern="^(?!unbinned\.fa)((?P&lt;designation&gt;.*)\.fa)" format="fasta" directory="outputs_DASTool_bins"/>
87 </collection> 87 </collection>
88 <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs" > 88 <data name="unbinned_contigs" format="fasta" from_work_dir="outputs_DASTool_bins/unbinned.fa" label="${tool.name} on ${on_string}: Unbinned contigs">
89 <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter> 89 <filter>output['write_bins']['write_bins'] != "" and output['write_bins']['write_unbinned']</filter>
90 </data> 90 </data>
91 <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" > 91 <data name="proteins" format="fasta" from_work_dir="outputs_proteins.faa" label="${tool.name} on ${on_string}: Proteins" >
92 <filter>output['proteins']</filter> 92 <filter>output['proteins']</filter>
93 </data> 93 </data>
175 <assert_contents> 175 <assert_contents>
176 <has_text text="Parameters"/> 176 <has_text text="Parameters"/>
177 <has_text text="Predicting genes"/> 177 <has_text text="Predicting genes"/>
178 </assert_contents> 178 </assert_contents>
179 </output> 179 </output>
180 <output_collection name="bins" count="1"> 180 <output_collection name="bins" count="1"> <!--unbinned.fa must not appear in bins collection. unbinned.fa appears as additional output below.-->
181 <element name="8" ftype="fasta"> 181 <element name="metabat.8" ftype="fasta">
182 <assert_contents> 182 <assert_contents>
183 <has_text text=">Ley3_66761_scaffold_6"/> 183 <has_text text=">Ley3_66761_scaffold_6"/>
184 </assert_contents> 184 </assert_contents>
185 </element> 185 </element>
186 </output_collection> 186 </output_collection>