# HG changeset patch # User iuc # Date 1575586689 0 # Node ID fcfd3dec8e93a6384a4aba591091b7ced5a1d441 # Parent 944958061b0f1a1ccc764862dd3c3858e519ad2e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit a82e4981dac025c909244acd7127c215bdb519a7" diff -r 944958061b0f -r fcfd3dec8e93 README.md --- a/README.md Fri Nov 08 18:46:40 2019 -0500 +++ b/README.md Thu Dec 05 22:58:09 2019 +0000 @@ -1,15 +1,21 @@ Wrappers for the core functionality of the dada2 package https://benjjneb.github.io/dada2/index.html. +- assignTaxonomyAddspecies - filterAndTrim - learnErrors - dada - mergePairs - makeSequenceTable +- plotComplexity +- plotQualityProfile - removeBimeraDenovo +- seqCounts Installation ============ +A conda release >=4.6 is needed so that the bioconductor-dada2 conda environment can be installed correctly. + The dada2 wrappers can be installed via the toolshed. Since they use datatypes that have been introduced with Galaxy release 19.09 they won't work out of the box for older Galaxy releases. In order to run the tools you may either upgrade Galaxy or execute the following two steps: diff -r 944958061b0f -r fcfd3dec8e93 macros.xml --- a/macros.xml Fri Nov 08 18:46:40 2019 -0500 +++ b/macros.xml Thu Dec 05 22:58:09 2019 +0000 @@ -8,7 +8,7 @@ 1.12 - 0 + 1