Mercurial > repos > iuc > dada2_plotcomplexity

comparison dada2_plotComplexity.xml @ 2:10cd92444a38 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/dada2 commit f2a33fe115fef9d711112b53136cf7619f1b19be"
author iuc
date Mon, 16 Mar 2020 11:31:39 +0000
parents 923d45f161cf
children 7c938c1e7e30
comparison
equal deleted inserted replaced
1:adb016654604 2:10cd92444a38
117 <collection type="paired"> 117 <collection type="paired">
118 <element name="forward" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> 118 <element name="forward" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
119 <element name="reverse" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> 119 <element name="reverse" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
120 </collection> 120 </collection>
121 </element> 121 </element>
122 <element name="F3D141_S207_L001">
123 <collection type="paired">
124 <element name="forward" value="F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
125 <element name="reverse" value="F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
126 </collection>
127 </element>
122 </collection> 128 </collection>
123 </param> 129 </param>
124 <param name="batch_cond|aggregate" value="FALSE"/> 130 <param name="batch_cond|aggregate" value="FALSE"/>
125 <output name="output_fwd" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> 131 <output name="output_fwd" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="200"/>
126 <output name="output_rev" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> 132 <output name="output_rev" value="complexity_rev.pdf" ftype="pdf" compare="sim_size" delta="200"/>
127 </test> 133 </test>
128 <!-- paired-separate joint, no-aggregate (sim_size because element ids differ) --> 134 <!-- paired-separate joint, no-aggregate (sim_size because element ids differ) -->
129 <test expect_num_outputs="2"> 135 <test expect_num_outputs="2">
130 <param name="batch_cond|batch_select" value="joint"/> 136 <param name="batch_cond|batch_select" value="joint"/>
131 <param name="batch_cond|paired_cond|paired_select" value="separate"/> 137 <param name="batch_cond|paired_cond|paired_select" value="separate"/>
132 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/> 138 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D141_S207_L001_R1_001.fastq.gz" ftype="fastqsanger.gz"/>
133 <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> 139 <param name="batch_cond|paired_cond|sdaer" value="F3D0_S188_L001_R2_001.fastq.gz,F3D141_S207_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
134 <param name="batch_cond|aggregate" value="FALSE"/> 140 <param name="batch_cond|aggregate" value="FALSE"/>
135 <output name="output_fwd" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> 141 <output name="output_fwd" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="200"/>
136 <output name="output_rev" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> 142 <output name="output_rev" value="complexity_rev.pdf" ftype="pdf" compare="sim_size" delta="200"/>
137 </test> 143 </test>
138 <!-- single, non-batch, aggregate, small sample --> 144 <!-- single, non-batch, aggregate, small sample -->
139 <test expect_num_outputs="1"> 145 <test expect_num_outputs="1">
140 <param name="batch_cond|batch_select" value="joint"/> 146 <param name="batch_cond|batch_select" value="joint"/>
141 <param name="batch_cond|paired_cond|paired_select" value="single"/> 147 <param name="batch_cond|paired_cond|paired_select" value="single"/>
142 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/> 148 <param name="batch_cond|paired_cond|reads" value="F3D0_S188_L001_R1_001.fastq.gz,F3D0_S188_L001_R2_001.fastq.gz" ftype="fastqsanger.gz"/>
143 <param name="n" value="10000"/> 149 <param name="n" value="10000"/>
144 <param name="batch_cond|aggregate" value="TRUE"/> 150 <param name="batch_cond|aggregate" value="TRUE"/>
145 <output name="output" value="complexity.pdf" ftype="pdf" compare="sim_size" delta="200"/> 151 <output name="output" value="complexity_fwd.pdf" ftype="pdf" compare="sim_size" delta="900"/>
146 </test> 152 </test>
147 153
148 <!-- paired, batch --> 154 <!-- paired, batch -->
149 <test expect_num_outputs="2"> 155 <test expect_num_outputs="2">
150 <param name="batch_cond|batch_select" value="batch"/> 156 <param name="batch_cond|batch_select" value="batch"/>