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comparison cwpair2.xml @ 7:076fae29bb39 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cwpair2 commit ca66053a0d915edba3d7f1d4ce014718e7f4f0f2
author iuc
date Thu, 02 May 2019 08:29:54 -0400
parents ea1c1ab897af
children
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6:ea1c1ab897af 7:076fae29bb39
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="cwpair2" name="CWPair2" version="@WRAPPER_VERSION@.0"> 2 <tool id="cwpair2" name="CWPair2" version="1.1.1">
3 <description>find matched pairs and unmatched orphans</description> 3 <description>find matched pairs and unmatched orphans</description>
4 <macros> 4 <macros>
5 <import>cwpair2_macros.xml</import> 5 <import>cwpair2_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
81 <param name="threshold_format" value="relative_threshold" /> 81 <param name="threshold_format" value="relative_threshold" />
82 <param name="relative_threshold" value="0.0" /> 82 <param name="relative_threshold" value="0.0" />
83 <param name="output_files" value="matched_pair" /> 83 <param name="output_files" value="matched_pair" />
84 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" /> 84 <output name="statistics_output" file="statistics1.tabular" ftype="tabular" />
85 <output_collection name="MP" type="list"> 85 <output_collection name="MP" type="list">
86 <element name="data_MP_closest_f0u25d100_on_data_1.gff" file="closest_mp_output1.gff" ftype="gff" compare="contains"/> 86 <element name="data_MP_closest_f0u25d100_on_data_1.gff" file="closest_mp_output1.gff" ftype="gff" />
87 <element name="data_MP_largest_f0u25d100_on_data_1.gff" file="largest_mp_output1.gff" ftype="gff" compare="contains"/> 87 <element name="data_MP_largest_f0u25d100_on_data_1.gff" file="largest_mp_output1.gff" ftype="gff" />
88 <element name="data_MP_mode_f0u25d100_on_data_1.gff" file="mode_mp_output1.gff" ftype="gff" compare="contains"/> 88 <element name="data_MP_mode_f0u25d100_on_data_1.gff" file="mode_mp_output1.gff" ftype="gff" />
89 </output_collection> 89 </output_collection>
90 </test> 90 </test>
91 <test> 91 <test>
92 <param name="input" value="cwpair2_input1.gff" /> 92 <param name="input" value="cwpair2_input1.gff" />
93 <param name="up_distance" value="50" /> 93 <param name="up_distance" value="50" />
104 <element name="histogram_F_largest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> 104 <element name="histogram_F_largest_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
105 <element name="histogram_F_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> 105 <element name="histogram_F_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
106 <element name="histogram_P_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" /> 106 <element name="histogram_P_mode_f0u50d100_on_data_1.pdf" file="magic.pdf" ftype="pdf" compare="contains" />
107 </output_collection> 107 </output_collection>
108 <output_collection name="D" type="list"> 108 <output_collection name="D" type="list">
109 <element name="data_D_closest_f0u50d100_on_data_1.tabular" file="closest_d_output2.tabular" ftype="tabular" compare="contains"/> 109 <element name="data_D_closest_f0u50d100_on_data_1.tabular" file="closest_d_output2.tabular" ftype="tabular" />
110 <element name="data_D_largest_f0u50d100_on_data_1.tabular" file="largest_d_output2.tabular" ftype="tabular" compare="contains"/> 110 <element name="data_D_largest_f0u50d100_on_data_1.tabular" file="largest_d_output2.tabular" ftype="tabular" />
111 <element name="data_D_mode_f0u50d100_on_data_1.tabular" file="mode_d_output2.tabular" ftype="tabular" compare="contains"/> 111 <element name="data_D_mode_f0u50d100_on_data_1.tabular" file="mode_d_output2.tabular" ftype="tabular" />
112 </output_collection> 112 </output_collection>
113 <output_collection name="O" type="list"> 113 <output_collection name="O" type="list">
114 <element name="data_O_closest_f0u50d100_on_data_1.tabular" file="closest_o_output2.tabular" ftype="tabular" compare="contains"/> 114 <element name="data_O_closest_f0u50d100_on_data_1.tabular" file="closest_o_output2.tabular" ftype="tabular" />
115 <element name="data_O_largest_f0u50d100_on_data_1.tabular" file="largest_o_output2.tabular" ftype="tabular" compare="contains"/> 115 <element name="data_O_largest_f0u50d100_on_data_1.tabular" file="largest_o_output2.tabular" ftype="tabular" />
116 <element name="data_O_mode_f0u50d100_on_data_1.tabular" file="mode_o_output2.tabular" ftype="tabular" compare="contains"/> 116 <element name="data_O_mode_f0u50d100_on_data_1.tabular" file="mode_o_output2.tabular" ftype="tabular" />
117 </output_collection> 117 </output_collection>
118 <output_collection name="MP" type="list"> 118 <output_collection name="MP" type="list">
119 <element name="data_MP_closest_f0u50d100_on_data_1.gff" file="closest_mp_output2.gff" ftype="gff" compare="contains"/> 119 <element name="data_MP_closest_f0u50d100_on_data_1.gff" file="closest_mp_output2.gff" ftype="gff" />
120 <element name="data_MP_largest_f0u50d100_on_data_1.gff" file="largest_mp_output2.gff" ftype="gff" compare="contains"/> 120 <element name="data_MP_largest_f0u50d100_on_data_1.gff" file="largest_mp_output2.gff" ftype="gff" />
121 <element name="data_MP_mode_f0u50d100_on_data_1.gff" file="mode_mp_output2.gff" ftype="gff" compare="contains"/> 121 <element name="data_MP_mode_f0u50d100_on_data_1.gff" file="mode_mp_output2.gff" ftype="gff" />
122 </output_collection> 122 </output_collection>
123 </test> 123 </test>
124 </tests> 124 </tests>
125 <help> 125 <help>
126 **What it does** 126 **What it does**