Mercurial > repos > iuc > cutesv

diff cutesv.xml @ 2:9d8fd0806572 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutesv commit 1221a5ddb00b62d789a6df44fae6a876f5cade37
author iuc
date Sat, 05 Oct 2024 16:42:14 +0000
parents f4ff82917a1d
children 3aca08f3fd7f
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line diff
--- a/cutesv.xml	Tue Aug 31 07:51:24 2021 +0000
+++ b/cutesv.xml	Sat Oct 05 16:42:14 2024 +0000
@@ -1,11 +1,11 @@
-<tool id="cutesv" name="cuteSV" version="@WRAPPER_VERSION@">
+<tool id="cutesv" name="cuteSV" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.1">
     <description>detects long-read-based SVs</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
     <xrefs>
         <xref type="bio.tools">cuteSV</xref>
     </xrefs>
-    <macros>
-        <import>macros.xml</import>
-    </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">cutesv</requirement>
         <requirement type="package" version="1.10">samtools</requirement>
@@ -103,7 +103,7 @@
                 <param name="ref_selector" value="history"/>
                 <param name="ref" ftype="fasta" value="genome.fasta" />
             </conditional>
-            <param name="seq_method" value="pb_ccs" />
+            <param name="sel_method|meth_selector" value="pb_ccs" />
             <param name="input_sample_file" ftype="bam" value="sample.bam" />
             <output name="out_sample">
                 <assert_contents>
@@ -117,7 +117,7 @@
                 <param name="ref_selector" value="cached"/>
                 <param name="ref" value="test_buildid"/>
             </conditional>
-            <param name="seq_method" value="pb_ccs" />
+            <param name="sel_method|meth_selector" value="pb_ccs" />
             <param name="input_sample_file" ftype="bam" value="sample.bam" />
             <output name="out_sample">
                 <assert_contents>