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comparison cutesv.xml @ 5:4d75ec9a85bd draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cutesv commit 0807bc20cc19d11346d9f0d6c35ab030e14f8493
author iuc
date Mon, 15 Sep 2025 08:25:40 +0000
parents 3aca08f3fd7f
children
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4:ae9a4e6ae552 5:4d75ec9a85bd
6 <xrefs> 6 <xrefs>
7 <xref type="bio.tools">cuteSV</xref> 7 <xref type="bio.tools">cuteSV</xref>
8 </xrefs> 8 </xrefs>
9 <requirements> 9 <requirements>
10 <requirement type="package" version="@TOOL_VERSION@">cutesv</requirement> 10 <requirement type="package" version="@TOOL_VERSION@">cutesv</requirement>
11 <requirement type="package" version="1.21">samtools</requirement> 11 <requirement type="package" version="1.22.1">samtools</requirement>
12 </requirements> 12 </requirements>
13 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
14 ln -s '$input_sample_file' ./sample.bam && 14 ln -s '$input_sample_file' ./sample.bam &&
15 ln -s '$input_sample_file.metadata.bam_index' ./sample.bam.bai && 15 ln -s '$input_sample_file.metadata.bam_index' ./sample.bam.bai &&
16 16