<?xml version="1.0"?>
<macros>
    <token name="@TOOL_VERSION@">4.1.1</token>
    <token name="@VERSION_SUFFIX@">0</token>
    <token name="@PROFILE@">22.05</token>
    <!-- Metaphlan DB compatible with this version of Metaphlan
    v4 introduced single genome level bins (SGB) and the index syntax differs from previous versions --> 
    <token name="@IDX_VERSION@">SGB</token>
    <token name="@IDX_DATA_TABLE@">metaphlan_database_versioned</token>
    <xml name="edam_ontology">
    <xrefs>
        <xref type="bio.tools">metaphlan</xref>
    </xrefs>
    </xml>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="@TOOL_VERSION@">metaphlan</requirement>
            <yield/>
        </requirements>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.7554/eLife.65088</citation>
        </citations>
    </xml>

    <xml name="subsample_common">
        <param argument="--mapping_subsampling" type="boolean" truevalue="--mapping_subsampling" falsevalue="" label="Subsampling on the mapping results" help="instead of on the reads"/>
        <param argument="--subsampling_seed" type="integer" optional="true" label="Subsampling seed" help="No value: random"/>
    </xml>
</macros>