# HG changeset patch
# User iuc
# Date 1508513512 14400
# Node ID 792bd038a59c2456bc94609510417209edf63057
# Parent  f36c2d58e59137fdcde5c4178123a9e63c9ab233
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 39a5f30a013c6d71ea84807b72511e3aa4bab147

diff -r f36c2d58e591 -r 792bd038a59c crossmap_wig.xml
--- a/crossmap_wig.xml	Thu Oct 19 12:39:22 2017 -0400
+++ b/crossmap_wig.xml	Fri Oct 20 11:31:52 2017 -0400
@@ -38,8 +38,8 @@
             <output name="output2" file="test_wig_01_output_a.sorted.bgr"/>
         </test>
 
-        <test>
-            <param name="input" value="test_wig_01_input_a.wig" ftype="wig"/>
+        <test><!-- cached reference genome -->
+            <param name="input" value="test_wig_01_input_a.wig" ftype="wig" dbkey="hg18" />
             <param name="index_source" value="cached"/>
 
             <output name="output" file="test_wig_01_output_a.bw"/>
diff -r f36c2d58e591 -r 792bd038a59c macros.xml
--- a/macros.xml	Thu Oct 19 12:39:22 2017 -0400
+++ b/macros.xml	Fri Oct 20 11:31:52 2017 -0400
@@ -28,9 +28,7 @@
             <when value="cached">
                 <param name="input_chain" type="select" label="Lift Over To">
                     <options from_data_table="liftOver">
-                        <!--
                         <filter type="data_meta" ref="input" key="dbkey" column="0"/>
-                        -->
                     </options>
                 </param>
             </when>
diff -r f36c2d58e591 -r 792bd038a59c test-data/cached_locally/liftOver.loc
--- a/test-data/cached_locally/liftOver.loc	Thu Oct 19 12:39:22 2017 -0400
+++ b/test-data/cached_locally/liftOver.loc	Fri Oct 20 11:31:52 2017 -0400
@@ -29,4 +29,4 @@
 #anoCar1	hg18	/depot/data2/galaxy/anoCar1/liftOver/anoCar1ToHg18.over.chain
 #...etc...
 
-A	B	${__HERE__}/aToB.over.chain
+hg18	hg19	${__HERE__}/aToB.over.chain