Mercurial > repos > iuc > crossmap_vcf

comparison macros.xml @ 11:b17b9f3a148a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit ad4d739b4837dd61abc85614568d22f271f14568
author iuc
date Mon, 02 Sep 2024 11:59:28 +0000
parents 1e9997ca9e14
children
comparison
equal deleted inserted replaced
10:1e9997ca9e14 11:b17b9f3a148a
1 <?xml version="1.0"?>
2 <macros> 1 <macros>
3 <xml name="requirements"> 2 <xml name="requirements">
4 <requirements> 3 <requirements>
5 <requirement type="package" version="@TOOL_VERSION@">crossmap</requirement> 4 <requirement type="package" version="@TOOL_VERSION@">crossmap</requirement>
6 <yield/> 5 <yield/>
7 </requirements> 6 </requirements>
8 </xml> 7 </xml>
9 <token name="@TOOL_VERSION@">0.6.1</token> 8 <token name="@TOOL_VERSION@">0.7.0</token>
10 <token name="@VERSION_SUFFIX@">0</token> 9 <token name="@VERSION_SUFFIX@">0</token>
11 <xml name="stdio"> 10 <xml name="stdio">
12 <stdio> 11 <stdio>
13 <regex match="Aborted (core dumped)" source="stdout" level="fatal"/> 12 <regex match="Aborted (core dumped)" source="stdout" level="fatal"/>
14 <regex match=".*" source="both" level="log"/> 13 <regex match=".*" source="both" level="log"/>
15 <exit_code range="1:"/> 14 <exit_code range="1:"/>
16 </stdio> 15 </stdio>
17 </xml> 16 </xml>
18 <xml name="version_command"> 17 <xml name="version_command">
19 <version_command><![CDATA[ 18 <version_command><![CDATA[
20 CrossMap.py 2>&1 | head -n 1 | grep -E --only-matching 'CrossMap.*' 19 CrossMap 2>&1 | head -n 1 | grep -E --only-matching 'CrossMap.*'
21 ]]></version_command> 20 ]]></version_command>
22 </xml> 21 </xml>
23 <xml name="chain"> 22 <xml name="chain">
24 <conditional name="chain_source"> 23 <conditional name="chain_source">
25 <param name="index_source" type="select" label="Source for LiftOver Data (chain file)"> 24 <param name="index_source" type="select" label="Source for LiftOver Data (chain file)">