Mercurial > repos > iuc > crossmap_bam

comparison tool-data/liftOver.loc.sample @ 1:b340f0750aa5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit d578fad97ce545d68dde40155d36426a121e4447
author iuc
date Tue, 26 Sep 2017 04:46:01 -0400
parents 9bcfe0aabf5d
children
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0:9bcfe0aabf5d 1:b340f0750aa5
5 #<FromSpecies> <ToSpecies> <PathToChainFile> 5 #<FromSpecies> <ToSpecies> <PathToChainFile>
6 # 6 #
7 #So, for example, if you had the chain file to convert from anoCar1 to galGal3 7 #So, for example, if you had the chain file to convert from anoCar1 to galGal3
8 #located at /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain, 8 #located at /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain,
9 #then the liftOver.loc entry would look like this: 9 #then the liftOver.loc entry would look like this:
10 #
11 #<FromSpecies> <ToSpecies> <PathToChainFile>
12 #<dbkey> <name> <value>
10 # 13 #
11 #anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain 14 #anoCar1 galGal3 /depot/data2/galaxy/anoCar1/liftOver/anoCar1ToGalGal3.over.chain
12 # 15 #
13 #and your /depot/data2/galaxy/anoCar1/liftOver directory would 16 #and your /depot/data2/galaxy/anoCar1/liftOver directory would
14 #contain all of your "chain" files (e.g.): 17 #contain all of your "chain" files (e.g.):