Mercurial > repos > iuc > crossmap_bam

comparison crossmap_bam.xml @ 8:acd53aae2d46 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit f436317e2f8d451621e297cfc474e43c20d60bb7"
author iuc
date Thu, 15 Jul 2021 16:13:38 +0000
parents c76b5389bb34
children c413cbb69f3c
comparison
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7:d38efcdbfa38 8:acd53aae2d46
1 <tool id="crossmap_bam" name="CrossMap BAM" version="@WRAPPER_VERSION@"> 1 <tool id="crossmap_bam" name="CrossMap BAM" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
2 <description>Convert genome coordinates or annotation files between genome assemblies</description> 2 <description>Convert genome coordinates or annotation files between genome assemblies</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements"/> 6 <expand macro="requirements"/>
44 <param name="index_source" value="history"/> 44 <param name="index_source" value="history"/>
45 <param name="input" value="test_bam_01_input_a.bam" ftype="bam"/> 45 <param name="input" value="test_bam_01_input_a.bam" ftype="bam"/>
46 <param name="input_chain" value="aToB.over.chain" ftype="csv"/> 46 <param name="input_chain" value="aToB.over.chain" ftype="csv"/>
47 <param name="include_fails" value="False"/> 47 <param name="include_fails" value="False"/>
48 48
49 <output name="output" file="test_bam_01_output_a.bam" ftype="bam" /> 49 <output name="output" file="test_bam_01_output_a.bam" ftype="bam" lines_diff="4" />
50 </test> 50 </test>
51 <test> 51 <test>
52 <param name="index_source" value="cached"/> 52 <param name="index_source" value="cached"/>
53 53
54 <param name="input" value="test_bam_01_input_a.bam" ftype="bam" dbkey="hg18"/> 54 <param name="input" value="test_bam_01_input_a.bam" ftype="bam" dbkey="hg18"/>
55 <param name="include_fails" value="False"/> 55 <param name="include_fails" value="False"/>
56 56
57 <output name="output" file="test_bam_01_output_a.bam" ftype="bam" /> 57 <output name="output" file="test_bam_01_output_a.bam" ftype="bam" lines_diff="4" />
58 </test> 58 </test>
59 </tests> 59 </tests>
60 <help><![CDATA[ 60 <help><![CDATA[
61 @HELP_GENERAL@ 61 @HELP_GENERAL@
62 62