Mercurial > repos > iuc > crossmap_bam
comparison test-data/aToB.over.chain @ 0:9bcfe0aabf5d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
| author | iuc |
|---|---|
| date | Sat, 01 Jul 2017 17:45:57 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:9bcfe0aabf5d |
|---|---|
| 1 chain 21270171362 chr1 249250621 + 10000 249233096 chr1 247249719 + 0 247199719 2 | |
| 2 619 137 0 | |
| 3 166661 50000 50000 | |
| 4 40302 50000 50000 | |
| 5 153649 50000 50000 | |
| 6 1098479 1 1 | |
| 7 47 1 1 | |
| 8 73 117 114 | |
| 9 773 1 1 | |
| 10 43 1 1 | |
| 11 864369 2 2 | |
| 12 51 3 0 | |
| 13 104 13694 13694 | |
| 14 104 0 3 | |
| 15 51 2 2 | |
| 16 134936 50000 50000 | |
| 17 1161048 150000 60000 | |
| 18 1440092 27273 50000 | |
| 19 7590365 50000 50000 | |
| 20 116914 100000 50000 | |
| 21 237250 50000 50000 | |
| 22 3518496 50000 50000 | |
| 23 12702424 150000 50000 | |
| 24 16145012 0 1 | |
| 25 7772 1 0 | |
| 26 4705841 0 1 | |
| 27 52977198 50000 50000 | |
| 28 157344 21065 50000 | |
| 29 16604841 50000 50000 | |
| 30 189539 150000 50000 | |
| 31 398739 21050000 20290000 | |
| 32 195588 50000 50000 | |
| 33 186739 150000 50000 | |
| 34 175055 50000 50000 | |
| 35 201709 100000 50000 | |
| 36 126477 130183 50000 | |
| 37 381 0 3 | |
| 38 315 0 2 | |
| 39 62 1 1 | |
| 40 45 1 0 | |
| 41 19 0 1 | |
| 42 8 1 1 | |
| 43 1158 1 0 | |
| 44 314 12 13 | |
| 45 2849 3 0 | |
| 46 5615 1 1 | |
| 47 37 1 1 | |
| 48 3172 6 4 | |
| 49 190 1 1 | |
| 50 34 1 1 | |
| 51 380 0 1 | |
| 52 2099 3 0 | |
| 53 765 2 2 | |
| 54 366 0 4 | |
| 55 1186 1 0 | |
| 56 460 0 1 | |
| 57 1242 28 28 | |
| 58 574 1 1 | |
| 59 21 1 1 | |
| 60 1460 1 1 | |
| 61 105 1 1 | |
| 62 701 3 0 | |
| 63 239 0 1 | |
| 64 970 11 11 | |
| 65 2365 1 1 | |
| 66 21 1 1 | |
| 67 384 8 8 | |
| 68 996 2 0 | |
| 69 10383 2 0 | |
| 70 713 0 1 | |
| 71 5188 1 1 | |
| 72 30 1 1 | |
| 73 1233 1 0 | |
| 74 132 1 1 | |
| 75 44 1 1 | |
| 76 1123 22 22 | |
| 77 1810 1 0 | |
| 78 512 1 1 | |
| 79 39 1 1 | |
| 80 1096 0 16 | |
| 81 743 1 0 | |
| 82 9028 0 1 | |
| 83 2506 0 6 | |
| 84 8446 2 0 | |
| 85 5505 0 3 | |
| 86 7541 1 0 | |
| 87 109864 50000 50000 | |
| 88 78698 50000 50000 | |
| 89 127263 50000 50000 | |
| 90 170669 50000 50000 | |
| 91 38311 100000 100000 | |
| 92 1022394 50000 50000 | |
| 93 281532 289973 50000 | |
| 94 1648 1539 0 | |
| 95 76 3225 3 | |
| 96 1018 34 34 | |
| 97 1716 2 0 | |
| 98 159 4 0 | |
| 99 1600 0 6 | |
| 100 1385 1 0 | |
| 101 2066 1 1 | |
| 102 32 1 3 | |
| 103 1556908 150000 50000 | |
| 104 185320 150000 50000 | |
| 105 172789 50000 50000 | |
| 106 220313 50000 50000 | |
| 107 455185 50000 50000 | |
| 108 22047237 1 0 | |
| 109 34365824 150000 50000 | |
| 110 259514 150000 50000 | |
| 111 17265625 50000 50000 | |
| 112 11394365 50000 50000 | |
| 113 13665999 150000 50000 | |
| 114 174886 | |
| 115 | |
| 116 chain 22466185064 chr2 243199373 + 10000 243102476 chr2 242951149 + 0 242751149 1 | |
| 117 1201236 0 1 | |
| 118 2057 1 1 | |
| 119 26 1 1 | |
| 120 4043 22 0 | |
| 121 82 7 101 | |
| 122 33 84 0 | |
| 123 26 1 23 | |
| 124 67 48 0 | |
| 125 176 318 0 | |
| 126 40 92 0 | |
| 127 33 0 74 | |
| 128 62 0 6 | |
| 129 22 0 118 | |
| 130 387 2446 0 | |
| 131 843 2450 0 | |
| 132 167 2304 0 | |
| 133 21342 1 1 | |
| 134 50 4 0 | |
| 135 2040 0 4 | |
| 136 9053 2 0 | |
| 137 88 3 53 | |
| 138 1078 0 1 | |
| 139 4122 1 0 | |
| 140 1608 28 1 | |
| 141 4029 0 9 | |
| 142 967 4547 1000 | |
| 143 420 27 0 | |
| 144 2237126 0 1 | |
| 145 2458 17 17 | |
| 146 4595 4 0 | |
| 147 3531 14 14 | |
| 148 3954 51129 50000 | |
| 149 1426129 160449 100025 | |
| 150 11087286 0 3 | |
| 151 773 103977 50000 | |
| 152 1576 0 1 | |
| 153 240 0 1 | |
| 154 318 2 0 | |
| 155 255 0 16 | |
| 156 2851 10 10 | |
| 157 1404 1 1 | |
| 158 27 1 1 | |
| 159 703 13 0 | |
| 160 375 0 1 | |
| 161 4783388 35000 25000 | |
| 162 848 0 2 | |
| 163 1225 0 2 | |
| 164 391 1 0 | |
| 165 3653 1 1 | |
| 166 28 1 1 | |
| 167 49 0 4 | |
| 168 4514 0 9 | |
| 169 9628 1 9 | |
| 170 1483 7 7 | |
| 171 1990 0 1 | |
| 172 1949 1 0 | |
| 173 2716230 1 0 | |
| 174 7799848 851 851 | |
| 175 38932068 5 9 | |
| 176 9477928 0 3 | |
| 177 7529698 72396 0 | |
| 178 1891551 294073 150000 | |
| 179 17672 1 0 | |
| 180 5792 1 0 | |
| 181 9017 0 266 | |
| 182 2944 0 1 | |
| 183 9388 2 0 | |
| 184 37828 4 0 | |
| 185 23436 0 4 | |
| 186 290931 1273578 1000000 | |
| 187 731068 3000000 3000000 | |
| 188 2558421 0 1 | |
| 189 1197 10 0 | |
| 190 685 42 46 | |
| 191 2309 0 1 | |
| 192 1332 22 23 | |
| 193 344 0 1 | |
| 194 1645 4 4 | |
| 195 4093 25 25 | |
| 196 2446 1 0 | |
| 197 6329 1 0 | |
| 198 769 0 1 | |
| 199 873 7 0 | |
| 200 1299 0 1 | |
| 201 8250 15 15 | |
| 202 4291 10626 12548 | |
| 203 1063 103 0 | |
| 204 75 0 218 | |
| 205 5897 1 1 | |
| 206 33 1 1 | |
| 207 9905 51 37 | |
| 208 1711 1 1 | |
| 209 45 1 1 | |
| 210 1597 4 4 | |
| 211 61 1 1 | |
| 212 869 13 0 | |
| 213 1633 15 15 | |
| 214 1179 3 0 | |
| 215 2819 0 2 | |
| 216 156 88 465 | |
| 217 100 0 25 | |
| 218 4753 0 8 | |
| 219 4903 6 6 | |
| 220 3847 0 2 | |
| 221 108126 0 145 | |
| 222 3542 1 0 | |
| 223 10276 0 1 | |
| 224 402 1 1 | |
| 225 47 1 1 | |
| 226 63 2 0 | |
| 227 583 1 1 | |
| 228 34 1 1 | |
| 229 8974 0 46 | |
| 230 379 1 1 | |
| 231 70 1 1 | |
| 232 2474 0 102 | |
| 233 1756 0 1 | |
| 234 8426 0 1 | |
| 235 11986570 151150 142000 | |
| 236 14207 1 1 | |
| 237 49 1 1 | |
| 238 1781 0 12 | |
| 239 409 1 0 | |
| 240 1874 1 1 | |
| 241 33 1 1 | |
| 242 4795 2 0 | |
| 243 3686 1 1 | |
| 244 15 1 1 | |
| 245 164 2 0 | |
| 246 7287 5 5 | |
| 247 702023 72796 150000 | |
| 248 69 1 0 | |
| 249 1598 0 1 | |
| 250 1340 0 1 | |
| 251 1030 0 4 | |
| 252 1166 10 10 | |
| 253 6406 1 1 | |
| 254 34 1 1 | |
| 255 3283 2 4 | |
| 256 496 1 23 | |
| 257 25 10 0 | |
| 258 40 1 1 | |
| 259 21282 2 1 | |
| 260 1406 0 44 | |
| 261 937 17 0 | |
| 262 18255 1 0 | |
| 263 172366 0 281526 | |
| 264 40517 0 406 | |
| 265 58864 1 2 | |
| 266 1843 0 2 | |
| 267 14994 0 1 | |
| 268 12992 2 0 | |
| 269 2571146 1 0 | |
| 270 35688061 108224 100000 | |
| 271 29671719 1 0 | |
| 272 39665349 1 0 | |
| 273 14876089 64197 20000 | |
| 274 401 0 3 | |
| 275 1831 1 1 | |
| 276 61 1 1 | |
| 277 654 11 1 | |
| 278 127 0 28 | |
| 279 116 25 29 | |
| 280 74 9 9 | |
| 281 3247 2 0 | |
| 282 1355 1 0 | |
| 283 816 1 0 | |
| 284 21 3 0 | |
| 285 526 1 1 | |
| 286 60 1 1 | |
| 287 773 1 0 | |
| 288 1494 1 0 | |
| 289 1683 1 0 | |
| 290 21 1 1 | |
| 291 596 1 0 | |
| 292 1582 1 0 | |
| 293 425 0 3 | |
| 294 1139 0 8 | |
| 295 138 144 813 | |
| 296 71 1 0 | |
| 297 385638 1 1 | |
| 298 219 1 1 | |
| 299 51 7 7 | |
| 300 54 15205 15205 | |
| 301 54 7 7 | |
| 302 51 1 1 | |
| 303 110 1 1 | |
| 304 5198249 0 1 | |
| 305 115 80 0 | |
| 306 60 40 0 | |
| 307 80 100 20 | |
| 308 442 1 1 | |
| 309 35 1 1 | |
| 310 119 9 129 | |
| 311 14 0 40 | |
| 312 61 1 1 | |
| 313 85 0 40 | |
| 314 1331 0 1 | |
| 315 1194 12 14 | |
| 316 1773 0 5 | |
| 317 1623 1 1 | |
| 318 25 1 1 | |
| 319 2422 21 22 | |
| 320 2315 0 1 | |
| 321 31 1 1 | |
| 322 1508 0 3 | |
| 323 50 0 4 | |
| 324 970 6 6 | |
| 325 7234 4 0 | |
| 326 1228 1 0 | |
| 327 1233 8 1 | |
| 328 4207 1 1 | |
| 329 41 1 1 | |
| 330 1715 50 50 | |
| 331 1532 0 2 | |
| 332 1714 2 0 | |
| 333 2299 2 0 | |
| 334 2143 1 1 | |
| 335 18 1 1 | |
| 336 917 1 0 | |
| 337 1082 1 1 | |
| 338 49 1 1 | |
| 339 9098 0 4 | |
| 340 5529 0 1 | |
| 341 3266 0 8 | |
| 342 894 6 0 | |
| 343 1440 1 1 | |
| 344 2095 2 0 | |
| 345 4179 18 13 | |
| 346 1785 0 1 | |
| 347 1674 0 6 | |
| 348 1217 32348 33000 | |
| 349 287 17 23 | |
| 350 40 173 0 | |
| 351 20 161 0 | |
| 352 13 66 0 | |
| 353 12 71 1 | |
| 354 12548 30000 30000 | |
| 355 952154 41011 25000 | |
| 356 1914 1 0 | |
| 357 225 1 1 | |
| 358 57 1 1 | |
| 359 2910 0 1 | |
| 360 471 1 0 | |
| 361 1956 1 1 | |
| 362 43 1 1 | |
| 363 991 0 92 | |
| 364 2863 3 0 | |
| 365 1838 306 0 | |
| 366 1006 30 0 | |
| 367 206 1 1 | |
| 368 27 0 3 | |
| 369 221 17 17 | |
| 370 1525 8 0 | |
| 371 413 1 1 | |
| 372 32 2 2 | |
| 373 1573 12 12 | |
| 374 2258676 | |
| 375 | |
| 376 chain 18404394637 chr3 198022430 + 60000 197962430 chr3 199501827 + 35000 199446827 3 | |
| 377 13552792 0 1 | |
| 378 585083 0 1 | |
| 379 2092 1 2 | |
| 380 71 0 1 | |
| 381 31067262 0 1 | |
| 382 90 1 0 | |
| 383 5628461 0 15 | |
| 384 788 1 0 | |
| 385 3676 0 2 | |
| 386 35 1 1 | |
| 387 4682 1 0 | |
| 388 1295 0 5 | |
| 389 437 53 42 | |
| 390 326 0 2 | |
| 391 3309 1 1 | |
| 392 40 1 1 | |
| 393 998 0 3 | |
| 394 3584 5 0 | |
| 395 930 5 7 | |
| 396 845 1 1 | |
| 397 28 2 1 | |
| 398 303 0 1 | |
| 399 507 0 5 | |
| 400 5088 1 0 | |
| 401 2185 10046 10048 | |
| 402 949 4 4 | |
| 403 35 1 1 | |
| 404 2874 0 1 | |
| 405 6717 0 1 | |
| 406 2823 1 0 | |
| 407 703 0 4 | |
| 408 5143 1 0 | |
| 409 2490 10 10 | |
| 410 162 7 7 | |
| 411 6308 0 15 | |
| 412 15177535 152352 260003 | |
| 413 2532 1 0 | |
| 414 1633 2 2 | |
| 415 24207544 3000000 4400000 | |
| 416 60453436 0 4 | |
| 417 40076813 20999 20000 | |
| 418 8195 1 1 | |
| 419 44 1 1 | |
| 420 1408 1 1 | |
| 421 33 1 1 | |
| 422 172 3 4 | |
| 423 25 1 1 | |
| 424 538 13 13 | |
| 425 173 1 1 | |
| 426 27 1 1 | |
| 427 636 1 1 | |
| 428 28 1 1 | |
| 429 470 3 3 | |
| 430 112 1 1 | |
| 431 375 1 1 | |
| 432 26 26 0 | |
| 433 115 78 0 | |
| 434 52 23 0 | |
| 435 104 26 0 | |
| 436 15 231 0 | |
| 437 56 1 1 | |
| 438 20 1 1 | |
| 439 815 16 16 | |
| 440 484 1 1 | |
| 441 49 18 0 | |
| 442 509 4 3 | |
| 443 23 1 1 | |
| 444 391 1 1 | |
| 445 44 1 1 | |
| 446 1278 0 4 | |
| 447 32 1 1 | |
| 448 263 4 0 | |
| 449 27 1 1 | |
| 450 2416 0 2 | |
| 451 3184 43 43 | |
| 452 1150 13 13 | |
| 453 736 1 1 | |
| 454 47 1 1 | |
| 455 1416 1 1 | |
| 456 20 1 1 | |
| 457 1020 1 1 | |
| 458 25 1 1 | |
| 459 482 5 0 | |
| 460 716 1 0 | |
| 461 1697 1 1 | |
| 462 29 1 1 | |
| 463 1270261 23108 27000 | |
| 464 40930 1 0 | |
| 465 17455 1 1 | |
| 466 28 4 4 | |
| 467 43 0 491 | |
| 468 1679 1 1 | |
| 469 33 7 5 | |
| 470 29 1 3 | |
| 471 54863 53 16 | |
| 472 7653 2 2 | |
| 473 29 2 2 | |
| 474 15 0 30 | |
| 475 180 0 75 | |
| 476 215 45 0 | |
| 477 360 915 0 | |
| 478 6188 96 0 | |
| 479 17 288 0 | |
| 480 1388 1 1 | |
| 481 37 1 1 | |
| 482 7956 0 1 | |
| 483 374 0 1 | |
| 484 2442058 | |
| 485 | |
| 486 chain 310844 chr4 191154276 + 9241835 9252105 chr4 191273063 + 8941714 8947231 850 | |
| 487 2726 14 14 | |
| 488 243 9 9 | |
| 489 78 4 4 | |
| 490 157 213 211 | |
| 491 265 85 85 | |
| 492 524 4751 0 | |
| 493 379 283 283 | |
| 494 539 | |
| 495 | |
| 496 chain 9105 chr4 191154276 + 8982741 8983189 chr10 135374737 - 120304868 120305301 22041837 | |
| 497 59 380 365 | |
| 498 9 |
