Mercurial > repos > iuc > crossmap_bam

annotate README.rst @ 2:6463cf32d733 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 93bc570011b7cad70abf36695823478f819b81f1
author iuc
date Thu, 19 Oct 2017 12:36:24 -0400
parents 9bcfe0aabf5d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
1 CrossMap wrapper for Galaxy
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
2 ===========================
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
3
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
4 CrossMap is versatile tool to convert genome coordinates or annotation files between genome
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
5 assemblies. It supports mostly commonly used file types, including BAM, BED,BigWig, GFF,
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
6 GTF, SAM, Wiggle, and VCF formats. For large plain text file types, such as BED, GFF, GTF
9bcfe0aabf5d planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/crossmap commit 8564863eaad7bb9f9c8c273d471511979a2c96aa
iuc
parents:
diff changeset
7 and VCF, reading from remote servers and file compression are supported.