Mercurial > repos > iuc > count_seqs
comparison count_seqs.xml @ 0:2cd85b59de92 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qiime/ commit c9bf747b23b4a9d6adc20c7740b9247c22654862
| author | iuc |
|---|---|
| date | Thu, 18 May 2017 09:19:33 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:2cd85b59de92 |
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| 1 <tool id="count_seqs" name="Count sequences" version="@WRAPPER_VERSION@.0"> | |
| 2 <description>Count the sequences in a fasta file</description> | |
| 3 <macros> | |
| 4 <import>macros.xml</import> | |
| 5 </macros> | |
| 6 <expand macro="requirements"/> | |
| 7 <version_command>count_seqs.py --version</version_command> | |
| 8 <command detect_errors="aggressive"><![CDATA[ | |
| 9 count_seqs.py | |
| 10 --input_fps '$input_fps' | |
| 11 -o '$output_fp' | |
| 12 ]]></command> | |
| 13 <inputs> | |
| 14 <param argument="--input_fps" type="data" format="fasta" multiple="True" label="Input sequence file" help=""/> | |
| 15 </inputs> | |
| 16 <outputs> | |
| 17 <data name="output_fp" format="txt" label="${tool.name} on ${on_string}: sequence counts"/> | |
| 18 </outputs> | |
| 19 <tests> | |
| 20 <test> | |
| 21 <param name="input_fps" value="count_seqs/in.fasta,count_seqs/in1.fasta,count_seqs/in2.fasta"/> | |
| 22 <output name="output_fp" ftype="txt"> | |
| 23 <assert_contents> | |
| 24 <has_text text="Sequence lengths"/> | |
| 25 <has_text text="Total"/> | |
| 26 </assert_contents> | |
| 27 </output> | |
| 28 </test> | |
| 29 </tests> | |
| 30 <help><![CDATA[ | |
| 31 **What it does** | |
| 32 | |
| 33 This tool counts the sequences in fasta files | |
| 34 | |
| 35 More information about this tool is available on | |
| 36 `QIIME documentation <http://qiime.org/scripts/count_seqs.html>`_. | |
| 37 ]]></help> | |
| 38 <citations> | |
| 39 <expand macro="citations"/> | |
| 40 </citations> | |
| 41 </tool> |