Mercurial > repos > iuc > coreprofiler_allele_calling
diff coreprofiler_allele_calling.xml @ 5:2cce87fd19ff draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/coreprofiler commit 7f2587b3f86c5024c7588185712d1eced9bbb037
| author | iuc |
|---|---|
| date | Thu, 18 Dec 2025 15:21:33 +0000 |
| parents | 41b933d366e3 |
| children | 2b8a05bf028b |
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--- a/coreprofiler_allele_calling.xml Fri Dec 12 21:37:23 2025 +0000 +++ b/coreprofiler_allele_calling.xml Thu Dec 18 15:21:33 2025 +0000 @@ -22,10 +22,13 @@ #end if #end for +#set $scheme_path = str($input_scheme.fields.path) + '/' + str($input_scheme.fields.scheme_path) +#set $db_path = str($input_scheme.fields.path) + '/' + str($input_scheme.fields.db_path) + coreprofiler allele_calling --query #echo ' '.join($input_files) - --scheme_dir '$input_scheme.fields.scheme' - --blast_db_path '$input_scheme.fields.database' + --scheme_dir '$scheme_path' + --blast_db_path '$db_path' --num_threads "\${GALAXY_SLOTS:-1}" ##Autotag @@ -88,7 +91,7 @@ <data name="outfa" format="fasta" label="${tool.name} on ${on_string}: Newly detected alleles" > <filter>scannew_section['output_selection'] and "outfa_output" in scannew_section['output_selection']</filter> </data> - <data name="num_alleles_per_locus" format="json" label="${tool.name} on ${on_string}: Number of alleles per locus of a given scheme" > + <data name="num_alleles_per_locus" format="tsv" label="${tool.name} on ${on_string}: Number of alleles per locus of a given scheme" > <filter>scannew_section['output_selection'] and "num_alleles_per_locus_output" in scannew_section['output_selection']</filter> </data> </outputs>