Mercurial > repos > iuc > coreprofiler_allele_calling

comparison test-data/coreprofiler_scheme.loc @ 5:2cce87fd19ff draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/coreprofiler commit 7f2587b3f86c5024c7588185712d1eced9bbb037
author iuc
date Thu, 18 Dec 2025 15:21:33 +0000
parents 41b933d366e3
children
comparison
equal deleted inserted replaced
4:71693d872155 5:2cce87fd19ff
2 #used for the CoreProfiler tool 2 #used for the CoreProfiler tool
3 # 3 #
4 #file has this format (white space characters are TAB characters) 4 #file has this format (white space characters are TAB characters)
5 # 5 #
6 #The columns are: 6 #The columns are:
7 #value name path database scheme 7 #value name tool_version database path db_path scheme_path
8 # 8 #
9 #For example 9 #For example
10 #coreprofiler_downloaded_20250625_klebsiella_3_scgMLST634_632_loci_bigsdb klebsiella_3: scgMLST634 [632 loci] (BIGSdb) coreprofiler_klebsiella_3 coreprofiler_klebsiella_3/db_klebsiella_3/klebsiella_3.fasta coreprofiler_klebsiella_3/scheme_klebsiella_3 10 #coreprofiler_downloaded_20250625_klebsiella_3_scgMLST634_632_loci_bigsdb klebsiella_3: scgMLST634 [632 loci] (BIGSdb) 1.1.1 bigsdb coreprofiler_klebsiella_3 db_klebsiella_3/klebsiella_3.fasta scheme_klebsiella_3
11 coreprofiler_downloaded_20250625_klebsiella_3_scgMLST634_632_loci_bigsdb klebsiella_3: scgMLST634 [632 loci] (BIGSdb) ${__HERE__}/coreprofiler_db ${__HERE__}/coreprofiler_db/tmp_blast_db/tmp_blast_db.fasta ${__HERE__}/coreprofiler_db/scheme_sample 11 coreprofiler_downloaded_20250625_klebsiella_3_scgMLST634_632_loci_bigsdb klebsiella_3: scgMLST634 [632 loci] (BIGSdb) 1.1.1 bigsdb ${__HERE__}/coreprofiler_db tmp_blast_db/tmp_blast_db.fasta scheme_sample