Mercurial > repos > iuc > cooc_tabmut

annotate test-data/omicron_ba1_mutations.yaml @ 2:a2963e79f4d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 1d5ff6cf59878101c2c5c94882d76763b47e169b
author iuc
date Fri, 25 Aug 2023 19:28:56 +0000
parents ab84c87e56f7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
1 variant:
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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2 voc: VOC-21NOV-01
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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3 pheuid: pentagon-refining
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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4 short: om1
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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5 pangolin: BA.1
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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6 source:
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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7 - https://github.com/cov-lineages/pango-designation/issues/343
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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8 threshold: 10
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
9 mut:
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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10 # ORF1ab
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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11 2832: 'A>G' # nsp3:K38R
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
12 5386: 'T>G' # syn nsp3
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
diff changeset
13 8393: 'G>A' # nsp3:A1892T
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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14 11537: 'A>G' # nsp6:I189V
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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15 13195: 'T>C' # syn nsp10
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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16 18163: 'A>G' # nsp14:I42V
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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17 # S
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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18 22679: 'T>C' # surface glycoprotein:S373P
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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19 22898: 'G>A' # surface glycoprotein:G446S
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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20 23048: 'G>A' # surface glycoprotein:G496S
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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21 23202: 'C>A' # surface glycoprotein:T547K
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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22 23599: 'T>G' # surface glycoprotein:N679K
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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23 24130: 'C>A' # surface glycoprotein:N856K
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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24 24469: 'T>A' # surface glycoprotein:N969K
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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25 24503: 'C>T' # surface glycoprotein:L981F
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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26 # M
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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27 26530: 'A>G' # membrane glycoprotein:D3G
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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28 26577: 'C>G' # membrane glycoprotein:Q19E
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
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29 # ORF6
ab84c87e56f7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cojac commit 38ed91999d4bbe3bedc294197926ea332eb6cd5e
iuc
parents:
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30 27259: 'A>C' # syn ORF6 protein