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comparison column_remove_by_header.xml @ 0:a87236651ddb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/column_remove_by_header commit 2150a3264364471090b650bdffde9f9c0b47ac39
author iuc
date Wed, 12 Apr 2017 17:17:15 -0400
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children 2a5f2bc24ffa
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-1:000000000000 0:a87236651ddb
1 <tool id="column_remove_by_header" name="Remove columns" version="0.0.1">
2 <description>
3 by heading
4 </description>
5 <requirements>
6 <requirement type="package" version="3.6.1">python</requirement>
7 <requirement type="package" version="4.1.3">gawk</requirement>
8 </requirements>
9 <command detect_errors="exit_code"><![CDATA[
10 python '$__tool_directory__/column_remove_by_header.py' '${input_tabular}' '${output_tabular}' '${input_tabular.unsanitized.metadata.delimiter}' '${keep_columns}' '${strip_characters}'
11 #for $header in $headers:
12 '${header.name}'
13 #end for
14 ]]>
15 </command>
16 <inputs>
17 <param name="input_tabular" type="data" format="tabular" multiple="False" optional="False" label="Tabular file"/>
18 <repeat name="headers" title="Header" min="1" default="1">
19 <param name="name" type="text" optional="False" label="Header name">
20 <sanitizer>
21 <valid initial="string.printable">
22 <remove value="&apos;"/>
23 </valid>
24 <mapping initial="none">
25 <add source="&apos;" target=""/>
26 </mapping>
27 </sanitizer>
28 </param>
29 </repeat>
30 <param label="Keep named columns" name="keep_columns" type="boolean" truevalue="--keep" falsevalue="" checked="False"/>
31 <param name="strip_characters" type="text" optional="False" label="Characters to strip when doing name comparison in first column" value="#" help="Removes characters from the left of the first column only.">
32 <sanitizer>
33 <valid initial="string.printable">
34 <remove value="&apos;"/>
35 </valid>
36 <mapping initial="none">
37 <add source="&apos;" target=""/>
38 </mapping>
39 </sanitizer>
40 </param>
41 </inputs>
42 <outputs>
43 <data format="tabular" name="output_tabular"/>
44 </outputs>
45 <tests>
46 <test>
47 <param name="input_tabular" value="in_1.tabular" ftype="tabular"/>
48 <param name="name" value="a"/>
49 <param name="keep_columns" value=""/>
50 <param name="strip_characters" value="#"/>
51 <output name="output_tabular" file="out_1.tabular" ftype="tabular"/>
52 </test>
53 <test>
54 <param name="input_tabular" value="in_1.tabular" ftype="tabular"/>
55 <param name="name" value="a"/>
56 <param name="name" value="KEY"/>
57 <param name="keep_columns" value="--keep"/>
58 <param name="strip_characters" value="#"/>
59 <output name="output_tabular" file="out_2.tabular" ftype="tabular"/>
60 </test>
61 </tests>
62 <help>
63 <![CDATA[
64 Removes or keeps columns based upon user provided values.
65 ]]>
66 </help>
67 <citations>
68 </citations>
69 </tool>