Mercurial > repos > iuc > collection_element_identifiers
comparison collection_element_identifiers.xml @ 0:2622e4b8a8be draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/collection_element_identifiers commit 3e691a225d82f9f79bba80902f385a6b4557ab45
| author | iuc |
|---|---|
| date | Fri, 15 Jun 2018 04:55:06 -0400 |
| parents | |
| children | 3e1230e35a49 |
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| -1:000000000000 | 0:2622e4b8a8be |
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| 1 <tool id="collection_element_identifiers" name="Extract element identifiers" version="0.0.1"> | |
| 2 <description>of a list collection</description> | |
| 3 <requirements> | |
| 4 </requirements> | |
| 5 <command detect_errors="exit_code"><![CDATA[ | |
| 6 mv '$cf' '$output' | |
| 7 ]]> | |
| 8 </command> | |
| 9 <configfiles> | |
| 10 <configfile name="cf">#for $el in $input_collection: | |
| 11 ${el.element_identifier} | |
| 12 #end for</configfile> | |
| 13 </configfiles> | |
| 14 <inputs> | |
| 15 <param name="input_collection" type="data_collection" collection_type="list" label="Dataset collection"/> | |
| 16 </inputs> | |
| 17 <outputs> | |
| 18 <data name="output" format="txt" /> | |
| 19 </outputs> | |
| 20 <tests> | |
| 21 <test> | |
| 22 <param name="input_collection"> | |
| 23 <collection type="list"> | |
| 24 <element name="e1" value="simple_line.txt" /> | |
| 25 <element name="e2" value="simple_line.txt" /> | |
| 26 <element name="e3" value="simple_line.txt" /> | |
| 27 </collection> | |
| 28 </param> | |
| 29 <output name="output" file="output.txt" /> | |
| 30 </test> | |
| 31 </tests> | |
| 32 <help><![CDATA[ | |
| 33 This tool takes a list-type collection and produces a text dataset as output, containing the element identifiers of all datasets contained in the collection. | |
| 34 ]]></help> | |
| 35 <citations> | |
| 36 </citations> | |
| 37 </tool> |