Mercurial > repos > iuc > colibread_discosnp_pp

comparison discosnp_pp.xml @ 6:a23f839ae56d draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/colibread commit 747394d19e88a569a5154615e366ea0401c820dd
author iuc
date Sat, 05 Oct 2024 19:53:21 +0000
parents e229f3c510aa
children
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5:e229f3c510aa 6:a23f839ae56d
1 <tool id="discosnp_pp" name="DiscoSnp++" version="@DISCOSNP_VERSION@+galaxy0" profile="@PROFILE@"> 1 <tool id="discosnp_pp" name="DiscoSnp++" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>is an efficient tool for detecting SNPs without a reference genome.</description> 2 <description>is an efficient tool for detecting SNPs without a reference genome.</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">2.5.4</token>
4 <import>macros.xml</import> 5 <import>macros.xml</import>
5 </macros> 6 </macros>
6 <expand macro="discosnp_requirements" /> 7 <expand macro="discosnp_requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 8 <command detect_errors="exit_code"><![CDATA[
8 #if str($input_type_options.input_type) == "single": 9 #if str($input_type_options.input_type) == "single":
55 <param argument="-R" type="boolean" truevalue="-R" falsevalue="" checked="false" label="Use the reference genome also in the variant calling, not only for mapping results" /> 56 <param argument="-R" type="boolean" truevalue="-R" falsevalue="" checked="false" label="Use the reference genome also in the variant calling, not only for mapping results" />
56 </when> 57 </when>
57 </conditional> 58 </conditional>
58 </inputs> 59 </inputs>
59 <outputs> 60 <outputs>
60 <data name="vcf" from_work_dir="*_coherent.vcf" format="vcf" label="VCF with ${tool.name} on $on_string"/> 61 <data name="vcf" from_work_dir="*_coherent.vcf" format="vcf" label="${tool.name} on ${on_string}: VCF"/>
61 <data name="fasta" from_work_dir="*_coherent.fa" format="fasta" label="Multifasta with ${tool.name} on $on_string"/> 62 <data name="fasta" from_work_dir="*_coherent.fa" format="fasta" label="${tool.name} on ${on_string}: FASTA"/>
62 </outputs> 63 </outputs>
63 <tests> 64 <tests>
64 <test> 65 <test>
65 <conditional name="input_type_options"> 66 <conditional name="input_type_options">
66 <param name="input_type" value="single"/> 67 <param name="input_type" value="single"/>