Mercurial > repos > iuc > colabfold_msa

annotate macros.xml @ 0:5ab662e63856 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
author iuc
date Wed, 21 Aug 2024 07:39:43 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
1 <macros>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
2 <token name="@VERSION@">1.5.5</token>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
3 <token name="@CUDA_VERSION@">12.2.2</token>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
4 <token name="@VERSION_SUFFIX@">1</token>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
5 <xml name="requirements">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
6 <requirements>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
7 <container type="docker">ghcr.io/sokrypton/colabfold:@VERSION@-cuda@CUDA_VERSION@</container>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
8 </requirements>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
9 </xml>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
10 <xml name="biotools">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
11 <xrefs>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
12 <xref type="bio.tools">Colabfold</xref>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
13 </xrefs>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
14 </xml>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
15 <xml name="citations">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
16 <citations>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
17 <citation type="doi">10.1038/s41592-022-01488-1</citation>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
18 </citations>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
19 </xml>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
20 <xml name="db_selector">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
21 <conditional name="select_db">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
22 <param name="use_db" type="select" label="Manually set database?">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
23 <option value="yes">Yes</option>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
24 <option value="no">No</option>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
25 </param>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
26 <when value="no"></when>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
27 <when value="yes">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
28 <param name="msa_mode" label="MSA mode" type="select">
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
29 <option value="mmseqs2_uniref_env">mmseqs2_uniref_env</option>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
30 <option value="mmseqs2_uniref">mmseqs2_uniref</option>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
31 <option value="single_sequence">Use single sequence input</option>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
32 <!-- <option value="custom">custom</option> -->
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
33 </param>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
34 </when>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
35 </conditional>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
36 </xml>
5ab662e63856 planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
diff changeset
37 </macros>