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comparison codeml.xml @ 3:96806adbb000 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit d187c613bdb8999bfaf46f2da6e6400e9012728b"
author iuc
date Wed, 16 Sep 2020 16:45:37 +0000
parents 853e3ce30204
children 682e5eca7458
comparison
equal deleted inserted replaced
2:853e3ce30204 3:96806adbb000
269 <param name="concat_nuc" ftype="fasta" value="concat.fasta" /> 269 <param name="concat_nuc" ftype="fasta" value="concat.fasta" />
270 <param name="tree" ftype="txt" value="RAxML_bestTree" /> 270 <param name="tree" ftype="txt" value="RAxML_bestTree" />
271 <output name="2ngdn" value="1_2ngdn" /> 271 <output name="2ngdn" value="1_2ngdn" />
272 <output name="2ngds" value="1_2ngds" /> 272 <output name="2ngds" value="1_2ngds" />
273 <output name="2ngt" value="1_2ngt" /> 273 <output name="2ngt" value="1_2ngt" />
274 <output name="run" value="1_run_codeml" lines_diff="20"/> 274 <output name="run">
275 <assert_contents>
276 <has_text text="CODONML (in paml version 4.9, March 2015)"/>
277 <has_text text="Time used:" />
278 </assert_contents>
279 </output>
275 <output name="ctl" value="1_codeml.ctl" lines_diff="4" /> 280 <output name="ctl" value="1_codeml.ctl" lines_diff="4" />
276 </test> 281 </test>
277 <test> 282 <test>
278 <conditional name="compat_model" > 283 <conditional name="compat_model" >
279 <param name="brmodel" value="2" /> 284 <param name="brmodel" value="2" />
285 <param name="concat_nuc" ftype="fasta" value="concat.fasta" /> 290 <param name="concat_nuc" ftype="fasta" value="concat.fasta" />
286 <param name="tree" ftype="txt" value="tree_model2" /> 291 <param name="tree" ftype="txt" value="tree_model2" />
287 <output name="2ngdn" value="2_2ngdn" /> 292 <output name="2ngdn" value="2_2ngdn" />
288 <output name="2ngds" value="2_2ngds" /> 293 <output name="2ngds" value="2_2ngds" />
289 <output name="2ngt" value="2_2ngt" /> 294 <output name="2ngt" value="2_2ngt" />
290 <output name="run" value="2_run_codeml" lines_diff="20" /> 295 <output name="run">
296 <assert_contents>
297 <has_text text="CODONML (in paml version 4.9, March 2015)"/>
298 <has_text text="Time used:" />
299 </assert_contents>
300 </output>
291 <output name="ctl" value="2_codeml.ctl" lines_diff="4" /> 301 <output name="ctl" value="2_codeml.ctl" lines_diff="4" />
292 </test> 302 </test>
293 <test> 303 <test>
294 <conditional name="compat_model" > 304 <conditional name="compat_model" >
295 <param name="brmodel" value="3" /> 305 <param name="brmodel" value="3" />
301 <param name="concat_nuc" ftype="fasta" value="concat.fasta" /> 311 <param name="concat_nuc" ftype="fasta" value="concat.fasta" />
302 <param name="tree" ftype="txt" value="tree_model3" /> 312 <param name="tree" ftype="txt" value="tree_model3" />
303 <output name="2ngdn" value="3_2ngdn" /> 313 <output name="2ngdn" value="3_2ngdn" />
304 <output name="2ngds" value="3_2ngds" /> 314 <output name="2ngds" value="3_2ngds" />
305 <output name="2ngt" value="3_2ngt" /> 315 <output name="2ngt" value="3_2ngt" />
306 <output name="run" value="3_run_codeml" lines_diff="20"/> 316 <output name="run">
317 <assert_contents>
318 <has_text text="CODONML (in paml version 4.9, March 2015)"/>
319 <has_text text="Time used:" />
320 </assert_contents>
321 </output>
307 <output name="ctl" value="3_codeml.ctl" lines_diff="4" /> 322 <output name="ctl" value="3_codeml.ctl" lines_diff="4" />
308 </test> 323 </test>
309 </tests> 324 </tests>
310 325
311 <help><![CDATA[ 326 <help><![CDATA[