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comparison codeml.xml @ 2:853e3ce30204 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/codeml commit 29dba85647adf75fd7276d5da0f3cc1b8eda23ea"
author iuc
date Thu, 26 Dec 2019 10:33:55 +0000
parents 5750c1f4b0eb
children 96806adbb000
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1:5750c1f4b0eb 2:853e3ce30204
1 <tool name="codeML" id="codeml" version="1.0"> 1 <tool name="codeML" id="codeml" version="@WRAPPER_VERSION@+galaxy1" profile="18.01">
2 <description> 2 <description>
3 Detects positive selection (paml package) 3 Detects positive selection (paml package)
4 </description> 4 </description>
5 5
6 <macros> 6 <macros>
7 <import>macros.xml</import> 7 <import>macros.xml</import>
8 </macros> 8 </macros>
9 9
10 <requirements> 10 <requirements>
11 <requirement type="package" version="4.9">paml</requirement> 11 <requirement type="package" version="@WRAPPER_VERSION@">paml</requirement>
12 </requirements> 12 </requirements>
13 13
14 <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command> 14 <version_command><![CDATA[ codeml /dev/null 2>&1 | tail -1 ]]></version_command>
15 15
16 <command><![CDATA[ 16 <command><![CDATA[
17 cp '$codeml_ctl' '$ctl' &&
17 codeml '$codeml_ctl' 18 codeml '$codeml_ctl'
18 &&
19 mv '$codeml_ctl' '$ctl'
20 ]]></command> 19 ]]></command>
21 20
22 <configfiles> 21 <configfiles>
23 <configfile name="codeml_ctl"><![CDATA[ 22 <configfile name="codeml_ctl"><![CDATA[
24 seqfile = $concat_nuc * sequence data file name 23 seqfile = $concat_nuc * sequence data file name