Mercurial > repos > iuc > cnvkit_access
diff access.xml @ 1:ae3ff7fd1efa draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
| author | iuc |
|---|---|
| date | Fri, 29 Sep 2023 15:34:55 +0000 |
| parents | 89362232bca6 |
| children |
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--- a/access.xml Sun May 14 20:04:49 2023 +0000 +++ b/access.xml Fri Sep 29 15:34:55 2023 +0000 @@ -4,6 +4,7 @@ <import>macros.xml</import> </macros> <expand macro="xrefs"/> + <expand macro="creators"/> <expand macro="requirements"/> <command detect_errors="exit_code"><![CDATA[ #import re @@ -13,7 +14,7 @@ #set $x=1 #for $x, $exc in enumerate($exclude): #set $name_base = re.sub('[^\w\-_\.]', '_', $exc.element_identifier) - #set $name = $name_base + '_' + str(x) + #set $name = $name_base #silent $names.append( $name ) ln -s '$exc' ${name}.bed && #end for @@ -31,7 +32,7 @@ --output access-excludes.bed ]]></command> <inputs> - <param name="fa_fname" type="data" format="fasta" label="Target coverage file" help="Reference genome fasta file" /> + <param name="fa_fname" type="data" format="fasta" label="Genome FASTA file" help="Reference genome fasta file" /> <param argument="--min-gap-size" optional="true" type="integer" label="Minimum gap size between accessible sequence regions" min="0" value="5000" help="Regions separated by less than this distance will be joined together" /> <param argument="--exclude" type="data" optional="true" format="bed" multiple="true" label="Additional regions to exclude" help="" /> </inputs>