# HG changeset patch
# User iuc
# Date 1761426016 0
# Node ID 55c75ee7160b11fef655ab270f90a668ab333905
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/muon commit fef10e0d450018d1e6ba4cbbda76c7686edc8aae
diff -r 000000000000 -r 55c75ee7160b cluster_analyze_embed_muon.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/cluster_analyze_embed_muon.xml Sat Oct 25 21:00:16 2025 +0000
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+ macros.xml
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+ `__
+
+Cluster: Cluster cells using the Louvain algorithm ('muon.tl.louvain')
+======================================================================
+
+ Cluster cells using the Louvain algorithm. This runs only the multiplex Louvain algorithm on the MuData object
+ using connectivities of individual modalities
+
+ More details on the `muon documentation
+ `__
+
+Analyze: Run Multi Omics Factor Analysis ('muon.tl.mofa')
+=========================================================
+
+ Run Multi-Omics Factor Analysis
+
+ More details on the `muon documentation
+ `__
+
+Analyze: Similarity Network Fusion ('muon.tl.snf')
+==================================================
+
+ Similarity network fusion (SNF). See Wang et al., 2014 (DOI: 10.1038/nmeth.2810).
+
+ More details on the `muon documentation
+ `__
+
+Embed: Embed the multimodal neighborhood graph using UMAP ('muon.tl.umap')
+==========================================================================
+
+ Embed the multimodal neighborhood graph using UMAP (McInnes et al, 2018). UMAP (Uniform Manifold Approximation
+ and Projection) is a manifold learning technique suitable for visualizing high-dimensional data.
+
+ More details on the `muon documentation
+ `__
+
+ ]]>
+
+
\ No newline at end of file
diff -r 000000000000 -r 55c75ee7160b macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Sat Oct 25 21:00:16 2025 +0000
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+ 0.1.7
+ 0
+ 23.0
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+ muon
+ leidenalg
+ louvain
+ mofapy2
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+ muon
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+ 10.1186/s13059-021-02577-8
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+ '$hidden_output' &&
+python '$script_file' >> '$hidden_output' &&
+touch 'mudata_info.txt' &&
+cat 'mudata_info.txt' @CMD_prettify_stdout@
+ ]]>
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+ advanced_common['show_log']
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