# HG changeset patch
# User iuc
# Date 1725873033 0
# Node ID 44914678d18fdcbd9762bbb60b3917011f452c72
# Parent  bd1bbbf7d9b24c0b432d13deda99a54993af1a14
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/clair3 commit 79c3c1123428c177bf4a8c38260232810457845d

diff -r bd1bbbf7d9b2 -r 44914678d18f clair3.xml
--- a/clair3.xml	Tue Jul 30 14:23:25 2024 +0000
+++ b/clair3.xml	Mon Sep 09 09:10:33 2024 +0000
@@ -2,7 +2,7 @@
     <description>germline small variant caller for long-reads</description>
     <macros>
         <token name="@TOOL_VERSION@">1.0.8</token>
-        <token name="@VERSION_SUFFIX@">0</token>
+        <token name="@VERSION_SUFFIX@">1</token>
     </macros>
     <xrefs>
         <xref type='bio.tools'>clair3</xref>
diff -r bd1bbbf7d9b2 -r 44914678d18f test-data/all_fasta.loc
--- a/test-data/all_fasta.loc	Tue Jul 30 14:23:25 2024 +0000
+++ b/test-data/all_fasta.loc	Mon Sep 09 09:10:33 2024 +0000
@@ -4,7 +4,7 @@
 #all_fasta.loc. This file has the format (white space characters are
 #TAB characters):
 #
-#<unique_build_id>	<display_name>	<file_path>
+#<unique_build_id>	<dbkey>	<display_name>	<file_path>
 #
 #So, all_fasta.loc could look something like this:
-test1	"Test Genome"	${__HERE__}/test1.fasta
+test1	test1	"Test Genome"	${__HERE__}/test1.fasta
diff -r bd1bbbf7d9b2 -r 44914678d18f tool-data/all_fasta.loc.sample
--- a/tool-data/all_fasta.loc.sample	Tue Jul 30 14:23:25 2024 +0000
+++ b/tool-data/all_fasta.loc.sample	Mon Sep 09 09:10:33 2024 +0000
@@ -4,7 +4,7 @@
 #all_fasta.loc. This file has the format (white space characters are
 #TAB characters):
 #
-#<unique_build_id>	<display_name>	<file_path>
+#<unique_build_id>	<dbkey>	<display_name>	<file_path>
 #
 #So, all_fasta.loc could look something like this:
-#test1	Test-Genome	./test-data/test1.fa
+#test1	test1	Test-Genome	./test-data/test1.fa
diff -r bd1bbbf7d9b2 -r 44914678d18f tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Tue Jul 30 14:23:25 2024 +0000
+++ b/tool_data_table_conf.xml.sample	Mon Sep 09 09:10:33 2024 +0000
@@ -6,7 +6,7 @@
         <file path="tool-data/model.loc" />
     </table>
     <table name="all_fasta" comment_char="#">
-        <columns>value, name, path</columns>
+        <columns>value, dbkey, name, path</columns>
         <file path="tool-data/all_fasta.loc" />
     </table>
 </tables>
diff -r bd1bbbf7d9b2 -r 44914678d18f tool_data_table_conf.xml.test
--- a/tool_data_table_conf.xml.test	Tue Jul 30 14:23:25 2024 +0000
+++ b/tool_data_table_conf.xml.test	Mon Sep 09 09:10:33 2024 +0000
@@ -7,7 +7,7 @@
     </table>
     <!-- Locations of reference genome files in fasta format -->
     <table name="all_fasta" comment_char="#">
-        <columns>value, name, path</columns>
+        <columns>value, dbkey, name, path</columns>
         <file path="${__HERE__}/test-data/all_fasta.loc" />
     </table>
 </tables>