Mercurial > repos > iuc > circos_tools
diff simpletable.xml @ 4:04ec82208544 draft default tip
Uploaded
| author | iuc |
|---|---|
| date | Mon, 06 Apr 2015 17:59:39 -0400 |
| parents | 6e5ac2173a43 |
| children |
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--- a/simpletable.xml Thu Mar 19 17:58:54 2015 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,53 +0,0 @@ -<tool id="circos_simpletable" name="Simple Table Plotter" version="@WRAPPER_VERSION@.0"> - <description></description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements" /> - <expand macro="stdio" /> - <command> -<![CDATA[ -cat $input | - perl \${CIRCOSTOOLS}/tools/tableviewer/bin/parse-table | - perl \${CIRCOSTOOLS}/tools/tableviewer/bin/make-conf -dir data; - -cp -Rv \${CIRCOSTOOLS}/tools/tableviewer/etc .; -mkdir img; -circos -conf .; - -cp img/tableview.png $output_png; -cp img/tableview.svg $output_svg; -]]> - </command> - <inputs> - <param format="tabular" name="input" type="data" label="Data Table" /> - </inputs> - <outputs> - <data format="svg" name="output_svg"> - </data> - <data format="png" name="output_png"> - </data> - </outputs> - <tests> - </tests> - <help> -<![CDATA[ -**What it does** - -Very simple table plotter - -.. image:: $PATH_TO_IMAGES/tablevie.png - -.. class:: warningmark - -1. Your tabular data MUST have both a column and row header:: - - Data A B - A 4 2 - B 0 -2 - -@REFERENCES@ -]]> - </help> - <expand macro="citations" /> -</tool>
