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comparison simpletable.xml @ 0:d7506cdbd5ec draft

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author iuc
date Tue, 17 Mar 2015 15:49:43 -0400
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1 <tool id="circos_simpletable" name="Simple Table Plotter" version="@WRAPPER_VERSION@.0">
2 <description></description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <command>
9 <![CDATA[
10 cat $input |
11 perl \${CIRCOSTOOLS}/tools/tableviewer/bin/parse-table |
12 perl \${CIRCOSTOOLS}/tools/tableviewer/bin/make-conf -dir data;
13
14 cp -Rv \${CIRCOSTOOLS}/tools/tableviewer/etc .;
15 mkdir img;
16 circos -conf .;
17
18 cp img/tableview.png $output_png;
19 cp img/tableview.svg $output_svg;
20 ]]>
21 </command>
22 <inputs>
23 <param format="tabular" name="input" type="data" label="Data Table" />
24 </inputs>
25 <outputs>
26 <data format="svg" name="output_svg">
27 </data>
28 <data format="png" name="output_png">
29 </data>
30 </outputs>
31 <tests>
32 </tests>
33 <help>
34 <![CDATA[
35 **What it does**
36
37 Very simple table plotter
38
39 .. image:: $PATH_TO_IMAGES/tablevie.png
40
41 .. class:: warningmark
42
43 1. Your tabular data MUST have both a column and row header::
44
45 Data A B
46 A 4 2
47 B 0 -2
48
49 @REFERENCES@
50 ]]>
51 </help>
52 <expand macro="citations" />
53 </tool>