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1 <tool id="circos_simpletable" name="Simple Table Plotter" version="@WRAPPER_VERSION@.0">
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2 <description></description>
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3 <macros>
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4 <import>macros.xml</import>
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5 </macros>
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6 <expand macro="requirements" />
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7 <expand macro="stdio" />
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8 <command>
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9 <![CDATA[
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10 cat $input |
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11 perl \${CIRCOSTOOLS}/tools/tableviewer/bin/parse-table |
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12 perl \${CIRCOSTOOLS}/tools/tableviewer/bin/make-conf -dir data;
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13
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14 cp -Rv \${CIRCOSTOOLS}/tools/tableviewer/etc .;
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15 mkdir img;
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16 circos -conf .;
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17
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18 cp img/tableview.png $output_png;
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19 cp img/tableview.svg $output_svg;
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20 ]]>
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21 </command>
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22 <inputs>
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23 <param format="tabular" name="input" type="data" label="Data Table" />
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24 </inputs>
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25 <outputs>
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26 <data format="svg" name="output_svg">
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27 </data>
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28 <data format="png" name="output_png">
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29 </data>
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30 </outputs>
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31 <tests>
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32 </tests>
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33 <help>
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34 <![CDATA[
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35 **What it does**
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36
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37 Very simple table plotter
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38
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39 .. image:: $PATH_TO_IMAGES/tablevie.png
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40
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41 .. class:: warningmark
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42
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43 1. Your tabular data MUST have both a column and row header::
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44
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45 Data A B
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46 A 4 2
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47 B 0 -2
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48
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49 @REFERENCES@
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50 ]]>
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51 </help>
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52 <expand macro="citations" />
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53 </tool>
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