Mercurial > repos > iuc > circos
comparison scatter-from-wiggle.xml @ 2:890ef899a3d7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
| author | iuc |
|---|---|
| date | Tue, 17 Sep 2019 16:54:24 -0400 |
| parents | |
| children | 74146c252453 |
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| 1:95664f8de269 | 2:890ef899a3d7 |
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| 1 <?xml version="1.0"?> | |
| 2 <tool id="circos_wiggle_to_scatter" name="Circos: bigWig to Scatter" version="@WRAPPER_VERSION@"> | |
| 3 <description>reformats bigWig files to prepare for Circos 2d scatter/line/histogram plots</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements"> | |
| 8 </expand> | |
| 9 <command detect_errors="exit_code"><![CDATA[ | |
| 10 python '$__tool_directory__/scatter-from-wiggle.py' '$input' > '$output' | |
| 11 ]]></command> | |
| 12 <inputs> | |
| 13 <param name="input" type="data" format="bigwig" label="Data file" /> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="output" format="tabular" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input" value="scatter/1.bw" ftype="bigwig" /> | |
| 21 <output name="output" file="scatter/1.out" ftype="tabular" /> | |
| 22 </test> | |
| 23 </tests> | |
| 24 <help><![CDATA[ | |
| 25 Converts standard bigWig files into a format appropriate for Circos scatter/line/histogram plot tracks. | |
| 26 | |
| 27 If you need to process bedgraph, please convert those to bigwig first. | |
| 28 ]]></help> | |
| 29 <expand macro="citations" /> | |
| 30 </tool> |