Mercurial > repos > iuc > circos
comparison resample.xml @ 2:890ef899a3d7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit 076837a2e9c2b6ececcea4aa286ea7a412387a96"
| author | iuc |
|---|---|
| date | Tue, 17 Sep 2019 16:54:24 -0400 |
| parents | |
| children | 74146c252453 |
comparison
equal
deleted
inserted
replaced
| 1:95664f8de269 | 2:890ef899a3d7 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool id="circos_resample" name="Circos: Resample 1/2D data" version="@WRAPPER_VERSION@"> | |
| 3 <description>reduce numbers of points in a dataset before plotting</description> | |
| 4 <macros> | |
| 5 <import>macros.xml</import> | |
| 6 </macros> | |
| 7 <expand macro="requirements" /> | |
| 8 <command detect_errors="exit_code"><![CDATA[ | |
| 9 resample | |
| 10 -bin '$bins' | |
| 11 $method | |
| 12 < '$input' | sed 's/ /\t/g' > '$output' | |
| 13 ]]></command> | |
| 14 <inputs> | |
| 15 <param name="input" type="data" format="tabular" label="1D/2D Data track"/> | |
| 16 <param name="bins" type="integer" value="1000000" min="1" label="Bin size" /> | |
| 17 | |
| 18 <param name="method" type="select" label="Summarization method"> | |
| 19 <option value="-avg">[2D] Average</option> | |
| 20 <option value="-min">[2D] Minimum value in bin</option> | |
| 21 <option value="-max">[2D] Maximum value in bin</option> | |
| 22 <option value="-sum">[2D] Sum of values in bin</option> | |
| 23 <option value="-count">[1D] Count bins</option> | |
| 24 </param> | |
| 25 </inputs> | |
| 26 <outputs> | |
| 27 <data name="output" format="tabular" /> | |
| 28 </outputs> | |
| 29 <tests> | |
| 30 <test> | |
| 31 <param name="input" value="resample/1.tab" ftype="tabular" /> | |
| 32 <param name="bins" value="10000000" /> | |
| 33 <output name="output" file="resample/1.out" ftype="tabular" /> | |
| 34 </test> | |
| 35 </tests> | |
| 36 <help><![CDATA[ | |
| 37 From the script's documentation: | |
| 38 | |
| 39 The data resolution in a figure is limited by the output print, or screen, | |
| 40 resolution and our own visual acuity. | |
| 41 | |
| 42 To read more about how these limits affect figure design, see | |
| 43 `this page <http://mkweb.bcgsc.ca/images/resolution/visual-acuity-sequence-visualization.pdf>`__ | |
| 44 | |
| 45 This script is designed to convert very high-resolution data tracks to | |
| 46 low-resolution equivalents which are easier to interpret and faster to | |
| 47 draw. | |
| 48 | |
| 49 ]]></help> | |
| 50 <expand macro="citations" /> | |
| 51 </tool> |