Mercurial > repos > iuc > circos

comparison tableviewer.xml @ 12:7b64033fb9b1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/circos commit e3d1aad2204a3385aa66f3b0625747151e9f94e8"
author iuc
date Mon, 22 Nov 2021 12:22:19 +0000
parents 74146c252453
children 8b1cf140bbd4
comparison
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11:0ee66defe58b 12:7b64033fb9b1
584 </link> 584 </link>
585 </links> 585 </links>
586 586
587 <<include etc/colors_fonts_patterns.conf>> 587 <<include etc/colors_fonts_patterns.conf>>
588 <<include etc/housekeeping.conf>> 588 <<include etc/housekeeping.conf>>
589 ]]></configfile> 589 max_ticks* = ${limits.max_ticks}
590 max_ideograms* = ${limits.max_ideograms}
591 max_links* = ${limits.max_links}
592 max_points_per_track* = ${limits.max_points_per_track}
593 ]]></configfile>
590 </configfiles> 594 </configfiles>
591 <inputs> 595 <inputs>
592 <param name="table" type="data" format="tabular" label="Input table"/> 596 <param name="table" type="data" format="tabular" label="Input table"/>
593 <section name="outputs" title="Outputs" expanded="true"> 597 <section name="outputs" title="Outputs" expanded="true">
594 <param name="png" type="boolean" truevalue="yes" falsevalue="no" label="Output PNG" checked="true"/> 598 <param name="png" type="boolean" truevalue="yes" falsevalue="no" label="Output PNG" checked="true"/>
610 <param type="integer" value="24" label="Font Size" name="size" /> 614 <param type="integer" value="24" label="Font Size" name="size" />
611 <expand macro="font_select" normal="true"/> 615 <expand macro="font_select" normal="true"/>
612 <expand macro="circos_color" label="Color" name="color" value="#000000" /> 616 <expand macro="circos_color" label="Color" name="color" value="#000000" />
613 </section> 617 </section>
614 </section> 618 </section>
619
620 <expand macro="limits" />
615 </inputs> 621 </inputs>
616 <outputs> 622 <outputs>
617 <data name="output_png" format="png" from_work_dir="circos.png" label="Circos TableViewer Plot"> 623 <data name="output_png" format="png" from_work_dir="circos.png" label="Circos TableViewer Plot">
618 <filter>outputs['png']</filter> 624 <filter>outputs['png']</filter>
619 </data> 625 </data>
627 <tests> 633 <tests>
628 <test> 634 <test>
629 <param name="table" value="tableviewer/1.tab" ftype="tabular" /> 635 <param name="table" value="tableviewer/1.tab" ftype="tabular" />
630 <output name="output_png" file="tableviewer/1.png" ftype="png" compare="sim_size" delta="90000" /> 636 <output name="output_png" file="tableviewer/1.png" ftype="png" compare="sim_size" delta="90000" />
631 </test> 637 </test>
638 <test expect_failure="true">
639 <param name="table" value="tableviewer/1.tab" ftype="tabular" />
640 <section name="limits">
641 <param name="max_ticks" value="1" />
642 <param name="max_ideograms" value="1" />
643 <param name="max_links" value="1" />
644 <param name="max_points_per_track" value="1" />
645 </section>
646 </test>
632 </tests> 647 </tests>
633 <help><![CDATA[ 648 <help><![CDATA[
634 The `official documentation <http://mkweb.bcgsc.ca/tableviewer/docs/>`__ has a lot of useful information. 649 The `official documentation <http://mkweb.bcgsc.ca/tableviewer/docs/>`__ has a lot of useful information.
635 650
636 You should provide a table that looks like: 651 You should provide a table that looks like: